AMCG00006065 (lsm4,LOC106613629)


Basic Information

Item Value
gene id AMCG00006065
gene name lsm4,LOC106613629
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15578084 ~ 15584761 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006065
TAGGTTGTAGGGACTTGTGGGTACCCGATTAAGAAAGTAAAGAAAGACTTCTAATAAGAGCTATAACCTACAGAAAAACAGCATGctGCCACTATCTTTGTTGAAGACTGCTCAGAATCACCCCATGCTGGTGGAGCTGAAGAATGGGGAGACTTACAACGGTCACCTGGTGAGCTGTGACAACTGGATGAACATCAACCTGCGAGAAGTCATCTGTACTTCCAGGGATGGAGACAAGTTCTGGAGGATGCCAGAGTGCTATATCCGGGGCAGCACCATCAAATACCTGCGCATCCCGGATGAGATCATTGATATGGTGAAGGAGGAGGTGGTGTCCAAAGGCAGGGGGCGCGGGGGCATGCAGCAGAACAAACAGCAGGGCAAGGGCCGCGGAGGGCCAGGGGCCGGCAGAGGGGCATCCCAGGGGCCGGGCGAGGCCAGCAGGAGAAGAAACCTGGCAAGCAGCAAGGAGGGAAAAACCAGCACTGAGGAGGGGTGTGATCGGTGCCGGGCCCCCGCTCTCCTGGCCTGGGAGCACCCCCACGACACAGTGGCCCTGCCCAGCCCAGCGCAGGCCTGCGGTCTGAGCCACTCCATGCTTTGCCCTCGGATCCTCTCTGTCTGCAGCCTGTGAAATGAATGCTACAGCCCAGCTAGGGGTGCCAGTTAAGATGTACCAGATTACTTGCTTTAATTAACAATCGTTTCTCCCCTTCAAGCCACGAAAAGCCATTTTGATTTCAAATGTACTCAGGAAGGGCTGCCATCCAAGATCTGTGTATTTTTGGTTCCCTCTTAAACGTACAAAACCTCGACGCCTCAGCCTTGAGTCTCGCAAGAGTGCGCTGTCGGGCACCACAAGCTCATTTCACCACTCGGTTAAAGTTTACAAATGCGAGCCATTCAGAAAaaacgtgtatatatatttttttggtcaATGACATATCGTTTTGTAGTAAAAGAGTTATGTTTTCAACTGTAATACCGAAACCCATCTCTCACTACTTCCTGATGAATCATTATTGTCAAAATTAGTGTTTCGACGTGACAAtgatgaaggaaaaaaataaaaaagttagtCATTTTCTCACCGGCGGGGTGATATGACCTTTGCATGAGCACAATGACAGACGCAAAGCCCAGGAGAGCTTGGATTGCGGTGTGCACAGAAGTAATGATTCAGCTCCtggtttgttatttattgtcatttgtttttattcatttgttttagctAAAGTTCTACAAGCAAGACCAGAAACTGCACCTTTTCATACTAGACACTGAAGCCTATATGGCATGTGTCCAGGCATGCTCTTACGGGTGGGTTGTGCTTGTGAATTGAGGACAATCTTTTGTCCTGATGTACATAACAAACCGTAAAGGAGGTTACAGATGGCATTTAATGGGCAGCATTAAGATTGAACAGATTCTTGCTTTGAGGCCTTTAGCTAATTTTATGTTTCTAACTCCGTAATGCGATGGTGGTGACTGCAGGTTGAAAAGTCTCTTTCACAAGGTTTCTAATGTAGAGACTGAAGATATGATAAAAGCAGAATTTTGAAACATGTGGGCAGTGTTTAGGAGGAACGGATGATGTTGCAGTACATATTTTTGAGGAACTGTTAACGTTAGCTGGTTTTGTTCTGGACATGTACATTTTGGAGACcgatttttatttcagtgaaaaataaaacggGGGTTTGAgaccctttttgttttctgttaaagGAGCAAAACGATTACTGTGGTTTATTGGAAACTGAATTCTGAAGAGCTATTCTGCTGTCACGTGATtttattaagaaacatttgGCTGGGGCCGGGTTTGagctttgaaataaacaaataaggagTTTAAAATGCATCCTGTACTATGCTGCTGCATTTCCTTCAGTATACTATACATTTGTCAATTACTAATTGATCAGTATTTATTAGCAAACCTAAAACATGGTGGGTGGCTTTGAGTTAACCCCACCTACTAGGGTTTGTTGTCATTCattcttttagtttttcccaATGGGTGAATTCGGAGACactcaattattaataaataggtGGACGTCTTGAATCTTTTATGGCTGCAGGCTGATTAACAAACTGTctgacctgttttttttttttaatgattcataCATTTGATTGTAGTTGACGGTGCCATCAGCagactgtcagtgtgtctctacATGTGTTgcagtcagttgaaaatgggaATATAGGACtaacttatgtttttttttttttttttctttttaaaggctTTCACTTACCTTAACAATATTTAAGTCTGTCTGGCACAGTGCTGAGGAATGGGTGGCAAAATTTGGATTcaagaaataaactaaacaaaccacCATTTTGTGGTCTGATTGTCAGGGTTTTTCATTCACATAGAAACCTGCTGCTCCTTCAAAATATCTTGCTTTAGTTTCCTCCATAAATTTGCCCTGGATGTGTGGTTTGCTTTTAAGAAGGTTTGATGTTTGTCAAGCTGCGATTTAAATACGGGAGAACTGGCCCTTTTGGAAAAACAAGCCCCACTCCAGACAGGTAAAAGCTGTGTGCGTGTTTAATAACCGTCCTCCTGAAATGTCAGTATTCGGATGTGGCATTTGAAGGCAGGAAAAAGGGGAGCCGCCAAAACATCCTCTGAATTGATTACTGCTGGAGACGCCAAACGAGCTATTAACTAATGGCTCTGACGGACAAACGAGCACGGTTGGTTAGAATCTGGTGTGCTCGATCGGACCTGAAACCCAAGTCAGATAAGGCCTGGTTTGAACCTGTCGGGCTTGTTGGAAAAACGCCTCGGGGATGGGCGAAAATTAGTCGAACAAGGAATTCCCAAACTAGACATCTTGGCTTTGTAGAAATATAAgctgtctttttaatttaagttcaCTCCCAAGGGCTGGTACATGACTCATACATTCTGTTCACTCAGCTGGGTTGACCGAGAGGATATTCACATAATAAAAGCCAGCAGGGCTAAGGGAGTGGCCAgctgtttagtgtgtgtgtgtgtgtgtacgtgtgcgtgtgtgtgtgaacggGTGTTACTGTATAAAAGAGTAGTTTGTTCAGATCACCCCCCGCCCATCTACCCTGATTTGTTTGACAAGTTTGTAATCATTTCCTTTCTCCCAATGAACTCTCTCCTATTTAcaagacaacttttttttttt
>TU196591
GCTTTGCGACACGCTCTACAAATCGCTTTGCGACGGGGAGTTAGTGCAACCTAACTAGCAAAAAAGCCGGAGAAGGCACCGCCCCACCTCTGCCTTGATTGGGTGTTGGTCACCCGTCAGTCACGACTCAACGCTCTGATTGGACGCAAGTAGGTTGGGATAGGTTGTAGGGACTTGTGGGTACCCGATTAAGAAAGTAAAGAAAGACTTCTAATAAGAGCTATAACCTACAGAAAAACAGCATGctGCCACTATCTTTGTTGAAGACTGCTCAGAATCACCCCATGCTGGTGGAGCTGAAGAATGGGGAGACTTACAACGGTCACCTGGTGAGCTGTGACAACTGGATGAACATCAACCTGCGAGAAGTCATCTGTACTTCCAGGGATGGAGACAAGTTCTGGAGGATGCCAGAGTGCTATATCCGGGGCAGCACCATCAAATACCTGCGCATCCCGGATGAGATCATTGATATGGTGAAGGAGGAGGTGGTGTCCAAAGGCAGGGGGCGCGGGGGCATGCAGCAGAACAAACAGCAGGGCAAGGGCCGCGGAGGGCCAGGGGCCGGCAGAGGTGTGTTTGGGGGGCGTGGCAGGGGCATCCCAGGGGCCGGGCGAGGCCAGCAGGAGAAGAAACCTGGCAAGCAGCAAGGAGGGAAAAACCAGCACTGAGGAGGGGTGTGATCGGTGCCGGGCCCCCGCTCTCCTGGCCTGGGAGCACCCCCACGACACAGTGGCCCTGCCCAGCCCAGCGCAGGCCTGCGGTCTGAGCCACTCCATGCTTTGCCCTCGGATCCTCTCTGTCTGCAGCCTGTGAAATGAATGCTACAGCCCAGCTAGGGGTGCCAGTTAAGATGTACCAGATTACTTGCTTTAATTAACAATCGTTTCTCCCCTTCAAGCCACGAAAAGCCATTTTGATTTCAAATGTACTCAGGAAGGGCTGCCATCCAAGATCTGTGTATTTTTGGTTCCCTCTTAAACGTACAAAACCTCGACGCCTCAGCCTTGAGTCTCGCAAGAGTGCGCTGTCGGGCACCACAAGCTCATTTCACCACTCGGTTAAAGTTTACAAATGCGAGCCATTCAGAAAaaacgtgtatatatatttttttggtcaATGACATATCGTTTTGTAGTAAAAGAGTTATGTTTTCAACTGTAATACCGAAACCCATCTCTCACTACTTCCTGATGAATCATTATTGTCAAAATTAGTGTTTCGACGTGACAAtgatgaaggaaaaaaataaaaaagttagtCATTTTCTCACCGGCGGGGTGATATGACCTTTGCATGAGCACAATGACAGACGCAAAGCCCAGGAGAGCTTGGATTGCGGTGTGCACAGAAGTAATGATTCAGCTCCtggtttgttatttattgtcatttgtttttattcatttgttttagctAAAGTTCTACAAGCAAGACCAGAAACTGCACCTTTTCATACTAGACACTGAAGCCTATATGGCATGTGTCCAGGCATGCTCTTACGGGTGGGTTGTGCTTGTGAATTGAGGACAATCTTTTGTCCTGATGTACATAACAAACCGTAAAGGAGGTTACAGATGGCATTTAATGGGCAGCATTAAGATTGAACAGATTCTTGCTTTGAGGCCTTTAGCTAATTTTATGTTTCTAACTCCGTAATGCGATGGTGGTGACTGCAGGTTGAAAAGTCTCTTTCACAAGGTTTCTAATGTAGAGACTGAAGATATGATAAAAGCAGAATTTTGAAACATGTGGGCAGTGTTTAGGAGGAACGGATGATGTTGCAGTACATATTTTTGAGGAACTGTTAACGTTAGCTGGTTTTGTTCTGGACATGTACATTTTGGAGACcgatttttatttcagtgaaaaataaaacggGGGTTTGAgaccctttttgttttctgttaaagGAGCAAAACGATTACTGTGGTTTATTGGAAACTGAATTCTGAAGAGCTATTCTGCTGTCACGTGATtttattaagaaacatttgGCTGGGGCCGGGTTTGagctttgaaataaacaaataaggagTTTAAAATGCATCCTGTACTATGCTGCTGCATTTCCTTCAGTATACTATACATTTGTCAATTACTAATTGATCAGTATTTATTAGCAAACCTAAAACATGGTGGGTGGCTTTGAGTTAACCCCACCTACTAGGGTTTGTTGTCATTCattcttttagtttttcccaATGGGTGAATTCGGAGACactcaattattaataaataggtGGACGTCTTGAATCTTTTATGGCTGCAGGCTGATTAACAAACTGTctgacctgttttttttttttaatgattcataCATTTGATTGTAGTTGACGGTGCCATCAGCagactgtcagtgtgtctctacATGTGTTgcagtcagttgaaaatgggaATATAGGACtaacttatgtttttttttttttttttctttttaaaggctTTCACTTACCTTAACAATATTTAAGTCTGTCTGGCACAGTGCTGAGGAATGGGTGGCAAAATTTGGATTcaagaaataaactaaacaaaccacCATTTTGTGGTCTGATTGTCAGGGTTTTTCATTCACATAGAAACCTGCTGCTCCTTCAAAATATCTTGCTTTAGTTTCCTCCATAAATTTGCCCTGGATGTGTGGTTTGCTTTTAAGAAGGTTTGATGTTTGTCAAGCTGCGATTTAAATACGGGAGAACTGGCCCTTTTGGAAAAACAAGCCCCACTCCAGACAGGTAAAAGCTGTGTGCGTGTTTAATAACCGTCCTCCTGAAATGTCAGTATTCGGATGTGGCATTTGAAGGCAGGAAAAAGGGGAGCCGCCAAAACATCCTCTGAATTGATTACTGCTGGAGACGCCAAACGAGCTATTAACTAATGGCTCTGACGGACAAACGAGCACGGTTGGTTAGAATCTGGTGTGCTCGATCGGACCTGAAACCCAAGTCAGATAAGGCCTGGTTTGAACCTGTCGGGCTTGTTGGAAAAACGCCTCGGGGATGGGCGAAAATTAGTCGAACAAGGAATTCCCAAACTAGACATCTTGGCTTTGTAGAAATATAAgctgtctttttaatttaagttcaCTCCCAAGGGCTGGTACATGACTCATACATTCTGTTCACTCAGCTGGGTTGACCGAGAGGATATTCACATAATAAAAGCCAGCAGGGCTAAGGGAGTGGCCAgctgtttagtgtgtgtgtgtgtgtgtacgtgtgcgtgtgtgtgtgaacggGTGTTACTGTATAAAAGAGTAGTTTGTTCAGATCACCCCCCGCCCATCTACCCTGATTTGTTTGACAAGTTTGTAATCATTTCCTTTCTCCCAATGAACTCTCTCCTATTTAcaagacaactttttttttttatgttcgaGATCATATATGAAACTGAATGCTGAAACGGATTGATTTGTCATAATTGTAAATGTTCAAGAAGTgttggatttttctttttataaaataaaatgacatggaAAGAA

Function

symbol description
lsm4 Predicted to enable U6 snRNA binding activity. Predicted to be involved in P-body assembly and spliceosomal snRNP assembly. Predicted to act upstream of or within mRNA splicing, via spliceosome and nuclear-transcribed mRNA catabolic process. Predicted to be located in nucleus. Predicted to be part of U6 snRNP and spliceosomal tri-snRNP complex. Predicted to be active in P-body. Orthologous to human LSM4 (LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated).

NR:

description
PREDICTED: U6 snRNA-associated Sm-like protein LSm4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006065 False 3185 mRNA 0.44 5 15578244 15584647
TU196591 True 3481 TUCP 0.44 5 15578084 15584761

Neighbor

gene id symbol gene type direction distance location
AMCG00006066 ddx49 coding upstream 33731 15537561 ~ 15544353 (+)
AMCG00006076 rps15,rig,LOC107578086,LOC107685215 coding upstream 141407 15433541 ~ 15436677 (+)
AMCG00006078 NA coding upstream 147677 15402929 ~ 15430407 (+)
AMCG00006077 ndufs7,LOC107747413,LOC107597168 coding upstream 180987 15392880 ~ 15397097 (+)
AMCG00006049 NA coding upstream 199979 15373975 ~ 15378105 (+)
AMCG00006060 LOC106613630,LOC106573907 coding downstream 18171 15602932 ~ 15603849 (+)
AMCG00006059 NA coding downstream 23938 15608699 ~ 15614431 (+)
AMCG00006061 NA coding downstream 55511 15640272 ~ 15640478 (+)
AMCG00006073 NA coding downstream 141909 15726670 ~ 15745152 (+)
AMCG00006074 rab3a,rab3ab,LOC105900867,LOC107553558,LOC107680521 coding downstream 168467 15753228 ~ 15766640 (+)
G156042 NA non-coding upstream 146145 15430476 ~ 15431939 (+)
G155974 NA non-coding upstream 390859 15185874 ~ 15187225 (+)
G155934 NA non-coding upstream 466909 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 468888 15107994 ~ 15109196 (+)
G155931 NA non-coding upstream 471681 15105595 ~ 15106403 (+)
G156130 NA non-coding downstream 193438 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 248318 15833079 ~ 15833294 (+)
G156279 NA non-coding downstream 879247 16464008 ~ 16467676 (+)
G156302 NA non-coding downstream 920009 16504770 ~ 16505206 (+)
G156321 NA non-coding downstream 1014771 16599532 ~ 16599858 (+)
G155932 NA other upstream 470350 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 472517 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 918587 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 1153338 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 1194504 14375995 ~ 14383580 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 379672 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 448131 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 469274 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 538367 16123128 ~ 16145238 (+)
G156327 NA other downstream 1043032 16627793 ~ 16629182 (+)

Expression


Co-expression Network