AMCG00006068


Basic Information

Item Value
gene id AMCG00006068
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15496753 ~ 15529324 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006068
TGGGGCAGTGTTTGCAGGATGGGAAAACACCATGAACCGCCTGAAAAGTGAAAATAGCCGGAGGGTGTCACCGTCTTAAATAGAGAAATCAGTAAAGCAGCGTCCACACATTTGCACTGCAGAAACAGATGCGAAGGGCACAGTTGGCACAGCGGAGATATAAGtgaAATTCCGGTGGAGATTTAAGAAGCATCCGGATCCGGAGACAAAAGAAAAGGggaagagaggggagagagaagaaaaaaatagccCATGCACCAGCAATTCAAATAAACTGGATTAAAATCAAAAAGCTGAACGACAGAGGTGCCAAAACGAAATGggCAAGCATGCTGTCACAGTCTCATTTTTCTACGACGCAAACAGAAATGTCTACAGAATCATCAGTGTGGGAGGGACAAagGCCATCATTAACAGCACCATTACGCCCAACATGGCTTTCACTAAGACGTCCCAGAAGTTTGGCCAGTGGGCGGACAGCCGGGCGAACACGGTGTATGGCCTGGGCTTCGCCTCAGAGCAGCAGCTGCACCAGTTTTCAGAGCGCTTCAAGGAGGTGAGGGAGGCAGCCCGTCTGGCTCGTGAGAAATCACAGGACAAGTTTGAGCTGAGCAACCCTGGGCTCAATATCGCCGCCCCACAGGACCTGTCTGAAGACCTGCAGTCTCCCCCCGTGATGTCGATCTGCGAGATGAACTGGGAGGCGGAACTGTTCACCCTGCAGGATAGCAACACCAAACTGGTGGCGGCTCTTCATGAAGCCAACGCCAATGTGGAGCAGTGGAAGAAACAGCTGGCAGCCTACCAGgatgagacagagagactgagggagcAGGTGGCAGAACTGGAAGATCAGGGCGGCCGACACGTGGGCACAGACATTGGCAAAGATGAGCTGTCGCAGTCTCTGGAGGAGCTGGAGTCCCTGCTCAAAGCCAAAGACGAGGAACTAGAAGCGCGGAATGCTGAGCTGGAAAGACGCGTCCAGAATGCCGAGCAGACACTGGCCAGCTCCCTGGAGGAACGAGACCGGGCGGAGAACGAACTGCACCGCATCATCGACATCCTGGATGTCAAGATCTTCGACCTCAATGACCTGAGACAGAGCCTTGCCAAGCTCATCGACAAATAGCCACCGCTGGGCCAGCCTGGGGGCGGGCacatagtgagagagagagagagagagctgggccAGTCAGCTCTAGCATAAGCACAACTGTTTGGGGCAAAAGCAGGAGCCCAACACTCTGGGTTCCACTGCAAAGCACATAAGTTAgcgggaaaaaaacaaaccattagcGCTTGTAAACGTGGCGAATGTAGGATGCAGTATTAGGTCAGTGTTTTGGGGGGTGGGAGACATTTtgacttttttgtattttgtttttactttgatgTAGCCTAACTAGGTTAAGATTTAAGATGCTTCATAATATTCAACTTTTGTCAGTATTAGTATTTTTAAGAGAGAAGAGGTACATACTCACTAGGACTTGAGTTCAGGAGAATCAGCATAGCTGTTTACCGGTGCGATacaaatgtatgattttttttttgttctcttcgCAACAGTTTCTGATTGATTAGGCTGGAGAGAAGATTGCCAAGAAGTGTTTAAAGGGGTTTGGGGTTTGATTGCCACCCGCACAAGCCTGGAAGGTGGCGTATCTCTTAAAATCACCAAGATGTATAAACCTGGTGTGCGAAGAATGAAGTTCCTCAGAACAATggacgacaaaaaaaaaaaaaagacaacttgGATTGAATTAGTGTAGAatgataaaatacaatgaaaatgtatctaaTTTCACAATGTGAATCCTGTATAAATTTGTGCTATCTAATAACCGAGCGTAGCAGGTACTCATCTGACTTTTGTAGcgtcaaattatttaatattgacagATTGCCATGCTCagtttgtatttctgttcacATACTGTCGATTTTGGTTACTTTGGTACCTGTCAATTGAGGACTGAAAGTGCTGTTTCTGTGTACAAAGTGCTACCAGACAAGTTAAGCAAATCTGGACTGGTCTAGCAAAGACTTCAAGACATCTGCTTTCAAATTGGACCTGAGTGCATAGACCTGTGAATGGTTTGAGGTTTTTGatggtttttagttttttttgtccCTACTGTTGTGTCGGAAACGATTGGTGAAGTTGAGTGGCAGTTCAGTGAATGCTTTGTTTCGTTTGGCATTTGAGAATGCATGTCAGATAACGGGACCGGAAATCGGACGTGTGTATATGGAACCCAGACCTGTACTTGGATGGACAGGCAGTTTGTATGGGACTTGTGTGCATGCCACCCCATAGAGTACTACACCTTAGTAGACGATGACGCCAATTCCATCCtacctgtaaaatattttgggaACCCTCTGGATGCCAAATATGGAAAGCCATtgcaaaaggaaattattattatgattattccATTGTATAAAATCTGTTatcacacatgtatgtatttttgtgcaaGAAGATATAGACTGTCGTGTGCATACTTGAAATAATGAGGTACAAGAATCTTAAGCTTCTTCGGTAAAAtaccgggggtgggggggggactttTCAAATCACAACCTCTCGCTGCTTTGCTTTGGAGTGTCCGGTTACAGATTGACGAGTTGCTGACAACCGGTCGGACAGGAAGGGCGGAAATGGCTTTTTGGGTGTTGCGAATATCTGGTTTCTAATGTCATTATGTGTTCTCTGATAGCTTGAATCACTTTGGCCTGTTAGATGTAATGTAGAGGCTGATGTCTGACGCCTCAGGATGCATATTtaggttttcaaaatgtatttaagtagaGCCACAGTGGGCGAAAGGTAGAATCGCTGCAGAGCTGGTCTTCAGACTTGAGTTAAATCACATGTTTCTTGGATGAGAGCCTAGAGCAAAGGCCTTGGTTTGACACATGACTGTGATACTCAATCCCAGTGTTACCTGGAAGCTGCATTGTACTGAAACTGCCCGACATCAAGAAGATTGTCAACCTAAACCCAGACCAGAGCAATTTGTTTAATGCATCTGGCAATCTTTTGGCACAATCAGACTCCCCAAAAATAGTGGATGAGTTCTGTTTTGAAAATCAAATGAAGGACTggactgttgttgttttttttctcccttctttTAAATTGACCACATTGTGAGAAAAAGAAGCCAATCACAACACAGTTTTGGGGACTTGATTG

Function

GO: NA

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006068 True 3208 mRNA 0.45 9 15496753 15529324

Neighbor

gene id symbol gene type direction distance location
AMCG00006082 NA coding downstream 8072 15483162 ~ 15488681 (-)
AMCG00006079 arrdc2,LOC106573914 coding downstream 16435 15469241 ~ 15480318 (-)
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding downstream 95789 15397252 ~ 15400964 (-)
AMCG00006080 NA coding downstream 106172 15378222 ~ 15390581 (-)
AMCG00006101 LOC106573875 coding downstream 315436 15161321 ~ 15181317 (-)
AMCG00006067 upf1,LOC105907049 coding upstream 15514 15544838 ~ 15559349 (-)
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding upstream 36138 15565462 ~ 15574687 (-)
AMCG00006075 NA coding upstream 244354 15773678 ~ 15776508 (-)
AMCG00006085 NA coding upstream 248883 15778207 ~ 15784001 (-)
AMCG00006086 NA coding upstream 260023 15789347 ~ 15818856 (-)
G156049 NA non-coding downstream 64823 15427308 ~ 15431930 (-)
G156048 NA non-coding downstream 72903 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 129112 15366104 ~ 15367641 (-)
G156014 NA non-coding downstream 166207 15272813 ~ 15330546 (-)
G156003 NA non-coding downstream 178576 15207520 ~ 15318177 (-)
G156104 NA non-coding upstream 52533 15581857 ~ 15584766 (-)
G156113 NA non-coding upstream 86238 15615562 ~ 15615787 (-)
G156203 NA non-coding upstream 417884 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 465463 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 533409 16062733 ~ 16063072 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 5111 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 488774 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 712473 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 813773 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 987139 14509233 ~ 14509614 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 424752 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 924960 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 976040 16505364 ~ 16521689 (-)
G156341 NA other upstream 1122216 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 1418673 16947997 ~ 16963650 (-)

Expression


Co-expression Network