AMCG00006071 (cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261)


Basic Information

Item Value
gene id AMCG00006071
gene name cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15204854 ~ 15215919 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006071
aaaagagagaagaagaaaaggcGGGGCTTGTAGCAAAGCGGGCGGCAGTGCGGGAGCAAACTTTGAAAGGAAGTGTCCCCGGCCGCAGCCCGGCTCAGAGCGCCTGTGTATCGGAGGAGCGACGCTGCAGCCCTCGGTGTCTCTGCAAACCCCGCCACAAACGACCATGTCCAGCTCGCAGTTCAACAGGGGGCCTGCTTATGGTTTCTCCGCAGAAGTCAAAAGCAAAatCGCCCAGAAATATGACCCCcagaaggaggaggagctgcGGGTCTGGATTGAGGAAGTGACCGGCCGACTGATCAACATACTGCAGCCTGGATCTGTGAAAAAGATCAGCCAGTCCTCTCAGAACTGGCATCAGCTGGAGAACCTGTCCAATTTCATTAAGGCCATCACGAGATATGGCCTGAAGCCTCACGACATCTTCGAAGCCAACGACCTGTTTGAGAGTGGCAACCTGACCCAGGTCCAGACCACCCTCCTGGCATTGGCTGGCATGGCTAAGACCAAAGGCCTGCAGTCAAGCATGGACATCGGGGTGAAGTACGCGGACAAACAGGAGAGGGCTTTTGATGAGGAGAAGATGAAGGCTGGCCAGTGTGTGATTGGGCTGCAGATGGGTACCAATAAGTGTGCCAGCCAGGCCGGCATGAATGCCTATGGCACCAGGAGACACCTGTACGACCCCAAGGCCCATATCCTCCCGCCCATGGACAACTCCACCATCAGTCTGCAGATGGGCACCAACAAGGGAGCCAGCCAGGCTGGCATGACTGCCCCTGGCACCCGCCGTGCCATCTATGACCAGAAACTGGGCACTGACAAGTGCGACAACAGCACCATGTCCCTGCAGATGGGCTACACCCAAGGCGCCAACCAGAGTGGCCAGAACTTTGGGCTGGGCCGGCAGATCTACGACGCCAAGTACTGCCCCAAGAGCGAGGGTGGAGAGAATGGGGCAGAGGCTGTGGCCTACTACCCAGAGTACCAGGATGAGGGCTACCAGGGGGGCTACCCAGAGGATGGGCAGGACTACTAGAAACCAGCAGTGAAGAAGGGGCGCTTGGGAAGAGAATGGGCGGGTGACGAGCTGTGTCAAAgatagctttttatttttatcttatttttagtttttaattcccCCTATCTTGGTAGTTTGTTCCCGAAATGAAGACTTGATGAAGAATGGAATTTGATGTGCCTCTCTGAGGAGATGTTCTTGTTTAGGGGTTTTTCTGACCAGTGAAGAAGCTCGTAGCAGCCTCTTTGCCAAGCATCCAGGCAGGAGGAaactgtacagagagagaggctctCAGCATCCATTGCAGTCCTGGCAGAAACCAGATTGTGGCCCCTCCCAGTGAGATGAAGAACagtatgtgtttattgtttgatCACAGGTggcttttttcttcctttttaagGGGGGGGTTGGCTTCAAAACTGTTTAATCCCTAGAAGAGGACCAGCTAGAGTCTTTCCAAATCGTGTATCTGCAACATCCtaccattttcctttttttttttttttttttttttttttttttttttttt

Function

symbol description
cnn2 Predicted to enable actin binding activity and calmodulin binding activity. Acts upstream of or within regulation of MAPK cascade; regulation of blood vessel endothelial cell migration; and response to steroid hormone. Predicted to be active in cytoskeleton. Is expressed in several structures, including central nervous system; digestive system; mesoderm; periderm; and vasculature. Orthologous to human CNN2 (calponin 2).

NR:

description
PREDICTED: calponin-2-like

GO:

id name namespace
GO:0031032 actomyosin structure organization biological_process
GO:0043408 regulation of MAPK cascade biological_process
GO:0043535 regulation of blood vessel endothelial cell migration biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006071 True 1556 mRNA 0.52 7 15204854 15215919

Neighbor

gene id symbol gene type direction distance location
AMCG00006070 LOC107661085,LOC108271288 coding upstream 8113 15188224 ~ 15196741 (+)
AMCG00006090 NA coding upstream 19641 15181964 ~ 15185213 (+)
AMCG00006091 NA coding upstream 48349 15148938 ~ 15156505 (+)
AMCG00006093 NA coding upstream 108017 15092017 ~ 15096837 (+)
AMCG00006030 NA coding upstream 162927 15018786 ~ 15041927 (+)
AMCG00006072 NA coding downstream 14046 15229965 ~ 15271081 (+)
AMCG00006048 NA coding downstream 74737 15290656 ~ 15298380 (+)
AMCG00006051 NA coding downstream 85845 15301764 ~ 15306184 (+)
AMCG00006052 NA coding downstream 112878 15328797 ~ 15356105 (+)
AMCG00006050 NA coding downstream 150135 15366054 ~ 15372138 (+)
G155974 NA non-coding upstream 17629 15185874 ~ 15187225 (+)
G155934 NA non-coding upstream 93679 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 95658 15107994 ~ 15109196 (+)
G155931 NA non-coding upstream 98451 15105595 ~ 15106403 (+)
G155929 NA non-coding upstream 101475 15100320 ~ 15103379 (+)
G156042 NA non-coding downstream 214557 15430476 ~ 15431939 (+)
G156082 NA non-coding downstream 345684 15561603 ~ 15605879 (+)
G156130 NA non-coding downstream 562280 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 617160 15833079 ~ 15833294 (+)
G156279 NA non-coding downstream 1248089 16464008 ~ 16467676 (+)
G155932 NA other upstream 97120 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 99287 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 545357 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 780108 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 821274 14375995 ~ 14383580 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 362165 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 748514 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 816973 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 838116 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 907209 16123128 ~ 16145238 (+)

Expression


Co-expression Network