AMCG00006075


Basic Information

Item Value
gene id AMCG00006075
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15773678 ~ 15776508 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006075
TACAGAACACGTCAGACACGTGTAACCCAATGGGATGAATCGGTCCGCGGTGGATTGGAAATTGAAGTTTATGTAACATTTATGATGCCGAAGGTTATGTGTTGAGGTATTACTTCAGATTGATTCAAGATACGTCCAGTCGGGCAGCTTAGATTGTTAGGATTTTGAAGATACTGTTATTATGTAACTGGAAAAGATCCCTGCAGTTTAGAAACAGCGTTGGTTTCCCTCTGAGCAGCTGATGCTGACAGTTTGACGCGTCCTGCGACTCAAAGCGACCTCCGTGCGGCCGGTCAGTCGGTGGATGTGCCTCCGCGGTGTGGCCGTAGATAGAAACCATGATCCCCCGGGGTAAGCAACTCCTAGTCCGGATTTCTGGCTGCTGGAAGCCACTTTTCAGGGGCCGGTACCTGATTGTGACCAATACCGTGATCTGCGGGGGGATGCTGGCTGCCGGGGATTGCGTCCAACAGACCCGGGAGAGGAGAAGAGACCCGGCGAAAATGCGGGACTGGTTCCGCACAGGACGCATGTTTGCTGTTGGGTGCTCGATGGGGCCGTTTCTGCATTACTGGTACCTGTACCTGGACAGGATATTTGTAGGGAAGGCCTTGAAAACTGTCAGTAAAAAAGTCCTTATTGACCAGCTGGTTGCCTCCCCAACTCTAGGAGCTTGGTACTTTGTGGGAATGGGAGTGATGGAGGGCCACACAGTGCAGGACAGCTGGGATGAATTTAAGGCGAAATTCTGGGAATTTTACAAGGCAAGCATAACACACATTAGCACGGCTGATTGGTGTGTGTGGCCTGCGGCCCAGATGATAAATTTCTACTTCCTGCCCTCCAAGTTTCGGGTGCTGTATGTCAATATAATCACATTAGGATGGGACACTTACCTCTCCTACCTCAAACACAGAATTGATGACCCCTCCGCAGACCCCAATACTGCCAGCGAGGAGAAGGAGACAGAAGTGTCCGTACCAGCTACACAGTGCTTGAAAGACAAACTCTAGACCTTCAAAAGCACTCCAAGGATTTCAGAGTAATATCTTGTGTAGtgaactgctttttaaaattaaattcagtttttggTTTTCATAACTGACGTGAATGGTTCATCAATAGCTGTCATTGGGTGTCAGTTTGGGGTTGGTGCAATGTGTTGAAAATGCCCATGCCTTTGATTAGTATAGTACATTCTGTCTGCAGACTGTTTTAATCTAGTATCCTTGCAGAAGAATATGAAGAcctattgaaaatgtaagtatcaTATCAATTGACTATTTTTATACAAGGGAGTGGGGGCTGATCTTTCAAATTCTTTACTTGAAATGAAGATAATTTTTGATtttcatacaatatataatttgatgtacttttggaaaataatattgactaattgttttttgtttagttttttttagctCAGAAATCATTTGTAGGAATATTTTCCAGGCCTCTGATGACTTTTGAGTAGTAACTTTTAATGATTGAACTTAAAGTGCCAGCCTGAGAAGACTGCTCCTCTTGACATTGTTCATTATAAAACGTGGGTGCCTTGATCTGTGCCAAAATCCGTCCACAATCCACAATCACCGTCATTGTGTATGCACTTTTGTGAGTGTACTCCTCTACCTCGCCTTTAGAAAGAGACTGTAGTAATACTGGCCCGCTCCGAAGTTAAAGATTCTTGTGTGCAGAGGTGGTCCTCGACATTCACTGGTTCTCGATGGGCAGTTGCGTGATCTTAGTGCTGTTTTTATCTGCATGGTGCAACTAATTGGTTTTAAGCTGCCTTGTTTATatctcttttattattaatcatattgtttttataatcatATGTGTCTATGTTTTGAAcaagccaaaataaaaaattctgGTCGTAG

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K13348 MPV17; protein Mpv17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006075 True 1889 mRNA 0.44 5 15773678 15776508

Neighbor

gene id symbol gene type direction distance location
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding downstream 198991 15565462 ~ 15574687 (-)
AMCG00006067 upf1,LOC105907049 coding downstream 214329 15544838 ~ 15559349 (-)
AMCG00006068 NA coding downstream 244354 15496753 ~ 15529324 (-)
AMCG00006082 NA coding downstream 284997 15483162 ~ 15488681 (-)
AMCG00006079 arrdc2,LOC106573914 coding downstream 293360 15469241 ~ 15480318 (-)
AMCG00006085 NA coding upstream 1699 15778207 ~ 15784001 (-)
AMCG00006086 NA coding upstream 12839 15789347 ~ 15818856 (-)
AMCG00006087 NA coding upstream 64404 15840912 ~ 15877424 (-)
AMCG00006116 comp coding upstream 225045 16001553 ~ 16012344 (-)
AMCG00006114 LOC107578059 coding upstream 247967 16024475 ~ 16031177 (-)
G156113 NA non-coding downstream 157891 15615562 ~ 15615787 (-)
G156104 NA non-coding downstream 188912 15581857 ~ 15584766 (-)
G156049 NA non-coding downstream 341748 15427308 ~ 15431930 (-)
G156048 NA non-coding downstream 349828 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 406037 15366104 ~ 15367641 (-)
G156203 NA non-coding upstream 170700 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 218279 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 286225 16062733 ~ 16063072 (-)
G156228 NA non-coding upstream 290161 16066669 ~ 16071528 (-)
G156344 NA non-coding upstream 898290 16674798 ~ 16676047 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 282036 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 765699 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 989398 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 1090698 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 1264064 14509233 ~ 14509614 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 177568 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 677776 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 728856 16505364 ~ 16521689 (-)
G156341 NA other upstream 875032 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 1171489 16947997 ~ 16963650 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_015451 mpv17l2 coding NC_007113.7 CM002886.2 24770435 ~ 24778912 (+)