AMCG00006079 (arrdc2,LOC106573914)


Basic Information

Item Value
gene id AMCG00006079
gene name arrdc2,LOC106573914
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15469241 ~ 15480318 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006079
GAATGCAGTTTAAAAGTATAAAGAGCTTCACTCTGGAGCTGGAGGGCCCGGCAGACGCGGTGTACACCAGTGGGGAGCTGCTGTCTGGCCAGGTGGTGCTGGAGCTCAACCGGGAGGTGAAGGTGCGGGCGCTGAAGGTCCTGGGCCGAGGGGTGGCCACGGCGCACTGGCTGGAGAACCGCAGCGTGGGCATGAACACTGTGTACAATGACTACACCTCCAAGGAGACCTACTTCAGGAAGAGGCAACACCTTATCAGAGGTGAGCACAGTGTCCTGTTTGTGTTGTCCAGCCAGGtgcaggggttgttgacagcGCACACAAAGGCAGGCAAACTCACTGTAGCGACTCTCGACCAACGACCGCCCGCCCGCTCCCTCGGATCTAACATGATTTTCGACAAAGTGCAAAAGCTGGACGTGGTCTTCGACTCCCCCGAGGTGGACTCGCCTCCCGTGTTCAGCAGCGGGGACGTGGTGTCCGGCAAGGTGCTGCTGGAGCTGGCCGGGGACGCCCGAGTGGCGTCGGTCAAGCTGCACGCCGAGGGCTTCGCCAAGGTGCACTGGACCGAGTCCCGCAGCGCCGGCTCCAGCACCGCCTACACCCAGAACTACAGCGACGAGGTGGAGTACCTGAACCGCAGGGAGACGCTCCTGCAGGCAGataaTGGTGAAATGACCGTACTGCAAGCAGGAAGACACGAGTTTCCTTTCAGTTTCCAACTTCCTGAAGAGACCTTGGTGACCTCATTCGAAGGCAAACATGGCAGCATCCGCTACTGGGTGAAAGTCAAGCTGCATCGTCCCTGGGCCACAGTCCGGAAGATCAAGAAGGAATTCACAGTCATTGAACCCATTGACATCAACACGCCAGCTCTTCTGGCTCCCCAGGCTGGCACCAAAGACAAGATGGCACGAGTTTGGTACCGTAATTTCGGACAGGTGTCCCTTACCGCCAAAATTGACCGCAAAGGATACACCCCAGGTGAAGTGATCCCCATCTTCGCTGAGTTCGACAACTCCACCTCCCGCTCCATCGTGCCCAAGGCCTACATCACCCAGACGCAGACCTTCATCGCGCGGGGCACCATGAAGCAGAAGAAATCTGTGGTGGCCACCCTGAGCGGGGACGTGGTGGGtgccaggaggagagagacctgGCACGGGCGGGCCATCAAGATCCCCCCGGTTGGGCCCTCCATCCTGCAGTGCCGCATCATCAAAGTGGAATACATGTTGCGGGTGTGTGTGGACGTGCCCGGCACTTCCAAGCTGTCCCTGGAGCTGCCATTGGTCATGGGCACCATCCCCCTGCACCCCTTCGGCAGCCGGACCTCCAGCGTGAGCAGCCAGTACAGCGTGAACCTAGAATGGCTCCGCATGGCCATCCCTGAGCAGCCTGAACCTCCCCCAGATTATAACACCATCATCTCGGAGGAGGAGGCTGAGCATAACATGTCCCCTCCATTGATTGAGGAGGACTTCACGGGCATCCTGGAGAGACCGTTCTTCGCGTATGTCCAGGAGTTCCGCTTCCGGCCGCCTCCAGTGTACTGTGAGATTGACCCCCATCCCCAGCCTCTCAACATAAGACCTCGCTGCATGACGTATTGAACAAAACGCCTCTCTGAGCGGCGGACGACCTGACTGAATTACAGGAACTTCTCCTGGGAGAGCCAATCCAGGGACCTGGAGGAGCTGCTTCCCCTGGAGGATTAGACTGTGGAGAGGACCTCAACACAGACAGCGGTTCTCCGATCCGATCTCCGAGAAAAGATCCAACGGAAACCGTGACAAACCAGAACCTCGCTGTCTTGACTTCCCCTCCGCGGTGGACGGACTCTAATCCTCACCTAGAAGGCCGTTCTTGGCCACAGAACTCTTTCCAAACGTGACCGCATGTGTCGGTGCCGGTGTGTGTGGGGAGGTACAACTGGAAAGGGGAACTTGTATGAGGAAattcgaaagcaaagaaaactcGACCAAAGAGTTGCCATTGAGACCTGTTTACTGAAGTTGATCCCTTCTCTAGCTTGCCAGCTGGCATGAGTTGCATTTTGATGCACAtgtaagaaaaagaaatggTATACTCGTGTCAACTTAATTTTCTTGAGGGTAAAATGAATTGGTACACTTAATCcagagttattttaattttttaaatctggagCAAAGGTGATTTTATTAGTGGAGTGGACAATGCCAACGTTTTTATTTCTAACTCTGTGAAAGTTCACCCTGTTCTGTCCCCCTCCTATAAATGTCCAAACCTGCTTTCTTCAGCCTTTGAGTTGAGCCTGCCGTCCAGTTGGCTCAAGTACAGTACCGGGCACGTATATTTATAGACATTGCAGAGGAGTACAAGGCAGTCTTTCCGGAAAAACCCGGAAAAAATGCTGAAGGTTTGGACATTAAGGCACGGGTATACCACACCAAGGGACTGACTGAGAGACTTAGAATGTCTGACAAAGAATTGATGGGGGTTGCACGTACTAAGCTAGGAATCTGTAAGTCCCAAGCAATATTAATGTCAATATTTCTTTTTGGAGACTTAATCTGAGATGTCTGGAGTTTGTAAACTGAGGAAGTGGTTAATGAGTTGGTAGGGACACATTGATGCATACTTAAGTCTATTAACCCATTAGGGAAGACTATCAATGCATATGGAGTGCATATTCTTGAAAAGATCGTTTGTGATCTTTCTGCGCTTGACTTGTGAAAGATGCCAAAGATGCCCGCTTCTGATTGCACTGTTTTTAATCTTGCCGGTGTGAGCTGGGTGTAATGGGTACTGTTCCCGTTTCAAGCACAAAACTGCTTTAGTAGAGATAGTGGAAGAACTATCTGAGCCATGAGTTTTGGTGCATCTACACCAGGTGGCCTTTTTGTCTGTACTCCGGTTCTGTAAAAGTACAGGGAAAGTGTACAGACTGGTACATGAAGATTAAACTGGGAAACCACTGTTAGCATGTTGATGCAGAACATTCCGAATTGTGTGGGAGGAGAATATTCTTGCCGTTTTAACGCAAGTGTTTTGTATTACACCAGCACTTTTTTTGGTAGTGTCGTGGACAAACacaattgcaattttaaaaatgtcttttctacatttgtgtaaatgtttctgtatttcttaaCTTGCCAaagtttttatatacattttttaaataaaacaatacaaatacaaactttcattttcctttttacaaaaaacaaaggtcAAAGAACCCTTTAGAACATCCGTTCAGTTTGGATTTCATTCAAGGATGCAACATGGACCATTAGTCCAATTTCTTTGCTGCTATCCTGTctagcttttgttttattgtaatttgaacCGAAAAGTGTTAATGAATGTAGCCACTGCTTCACCTTGGTGATATAAATGATAATTCATGATCTAGGGGTTCAAACGTCTGATCAAACTGCATGAGGGACATTTTTAATGGTTGGGGAAACCAAAAGCAAACCATGGAGGATTGGGGTTCTACAGCCAAATTAAACTTGTTTAGGAAATGTGACTGTCCCAGAATTGCGGCTCGCATGAGTGCTAGAACTGCCTGCTGTAAGGTTTTGTACCTCGGATCAACCGAGGTAACTGCAAAAGGAGATGTGTATTTAGCACTGGCACTAAATATGTAATAGATTACCTCAGGAGAACCTGGTACAGAAAGTGAAAACAAG

Function

symbol description
arrdc2 Predicted to be involved in protein transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in basal plate midbrain region; blood vessel; nervous system; neural rod; and pronephric duct. Orthologous to human ARRDC2 (arrestin domain containing 2).

NR:

description
PREDICTED: arrestin domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006079 True 3683 mRNA 0.49 9 15469241 15480318

Neighbor

gene id symbol gene type direction distance location
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding downstream 68277 15397252 ~ 15400964 (-)
AMCG00006080 NA coding downstream 78660 15378222 ~ 15390581 (-)
AMCG00006101 LOC106573875 coding downstream 287924 15161321 ~ 15181317 (-)
AMCG00006099 kank3 coding downstream 345913 15104332 ~ 15123328 (-)
AMCG00006094 NA coding downstream 365709 15098331 ~ 15103532 (-)
AMCG00006082 NA coding upstream 2844 15483162 ~ 15488681 (-)
AMCG00006068 NA coding upstream 16435 15496753 ~ 15529324 (-)
AMCG00006067 upf1,LOC105907049 coding upstream 64520 15544838 ~ 15559349 (-)
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding upstream 85144 15565462 ~ 15574687 (-)
AMCG00006075 NA coding upstream 293360 15773678 ~ 15776508 (-)
G156049 NA non-coding downstream 37311 15427308 ~ 15431930 (-)
G156048 NA non-coding downstream 45391 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 101600 15366104 ~ 15367641 (-)
G156014 NA non-coding downstream 138695 15272813 ~ 15330546 (-)
G156003 NA non-coding downstream 151064 15207520 ~ 15318177 (-)
G156104 NA non-coding upstream 101539 15581857 ~ 15584766 (-)
G156113 NA non-coding upstream 135244 15615562 ~ 15615787 (-)
G156203 NA non-coding upstream 466890 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 514469 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 582415 16062733 ~ 16063072 (-)
AMCG00006102 slc5a5 other downstream 461262 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 684961 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 786261 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 959627 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 1127638 14336891 ~ 14341603 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 473758 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 973966 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1025046 16505364 ~ 16521689 (-)
G156341 NA other upstream 1171222 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 1467679 16947997 ~ 16963650 (-)

Expression


Co-expression Network