AMCG00006080



Basic Information


Item Value
gene id AMCG00006080
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15378222 ~ 15390581 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00006080
CACGCAGCGAGCCGCGGCCATCGGGGCTCCAGGAGGCCTACGCGCCCGACTCGATTTGTTGGCGTTGCTGCGTCAAGCCAGCTTACGCCCGACATCACAGTACGCCAACCCCCGGCTTCGGGACTACGCCGTGCGTGTGTTTGTGGATTGTGGCAGAGCTCTAGTCTCCACGTCTTGCGCGCCAGTGTTGGCTTTTGTACAACTTTGTTTGTGCGGctgctgttcatttttattaaatttttctGCTCGTGTTGTGCACGCTTCTCTACTTTAGCTGCCACCCTTGTGCCGAGGCCTCGGGTCTGCGCTAATGAGAGCGCCGGTCGACGTGTGCCCCCGCCTTTGTGTCCTGAAGATCTCCTCACGTCGACGGAGCATTTTCGGTCGAACTCCACGTCGACAGCGTTGAATTTGGTCGATTTTCCGTCGACGAACTACTTCAAGTGGACACCGTTTTACTGAGAGCAATTTCTACTTCCAGTCGGTGGAAAAAACCTTTGAACCGACGGCACCTGGACTCTTATTTACAGCCTTTGAGGCTAGAGTCTCCCATTGCCATGGAACCTGCTAAGGTGCTGGCAGCACTGCGGGCGCTTGCTGTGGGTCATGACTCTCGCTCCTCATCGGAGTCGGCAGGATTTCACCGCTGTGGCAGCTGCTCCAACAAACTGCCATCACAGGATCCACACCAGTTTTGTCTGTCATGTTTAGGGCCTGGCCACGCGTCTGAGGCCCTGCGCAATCCGTCCTCTTGCCAGATCTGCACTGCGTTTCGCACAAGGACGCTGAAGGACAGACTGAAGCGAGCCAGAGGCATCTACCCTGCTTTGGCCAGCAGCTCCTGCACAGCCACATCAGCGGGGGTGGGCGGGCACCCTTCTGGGACACTTACGCATGCGACGGCTGCTGCTTCCTCCAAGGGATCATCAGCGGGGCACTCCCTCAGCAGATCACACAAGCGCAGACACCGTTCACCTTCAGCCTCTCCTCCTGCTTCCCCCCCACACCTTCAGgagcaacacacagacaaacgGCTGATGATGCTCCAAGACCACATGGCAGATTTTATGGGAGTTGTAATCAAACAGCAGGAGATGATGACCTCTCTACTGCTGCCCAAGGAAGCAGAGTCTTCCACAGCCTCCTGCTCCAGGCCTCCTGCAGCACCTGCTTCTCTGCCCTCTGCCTCCCATGAAGTGCCTGGCCGTTCCCAGCGCATTGAGCGCTTGAACTCTGGCTCTCGCACATGCTTCTCTGAGCGGCACCAAGATTCTGTCTCTCTGGAGGTGTCAGGTGGTGAATGTGCCCCTAATGCACTTGAGGTGAAAGTGGAGCCCATCTCCATACTAAGCTTGGTCACCCCTGTGTCCTCTGTGGAAGGGGGTGGGGTGCCCCCACCGGATGACTTCTTGTCCAGGGTGGGCCGGGCAGCACAGTATCTTGGAGTGCCTTGGCCAGAAGACCCAGAACCAGAGCGATCACTTTTCCATCGCCACACTCAGTCTGCCAAACGCTCCCGCTTTCTTCCAGCTTTTCCTGACTACCTCAAGGAGGTACAGGCCTCTTGGGACAAGCCTGCGTCTGGGCCATCCACGATCAAGCTGGCGGCGCAATTTGCTCGTTTTCAGGGAGCTGACACACATGGACTGACCTCTTTCCCAGTGGTGGACCCTGCCTTTGCTGCGCTGGTCTCTGCTCCTCCTGTCTCCACCACACAGAGAGACTTTGTCCTTCCAAACCGCCAGTGCAGGAGTACTGAAGTTTTCCTGCAGAAGTCCTATGCGGCAGAAGCGCAGGCTTTGCgcattcaaaatacatctaGCCTGCTGGCGGTGTATGTGGCGGAGCTGGCAGATAAGCACAAGGAGGCTCCCACACCTGAGGTAATGCGAGAGATTGCGGGAGTGGCAGACACGGTGGTGGATCTAATGAAATTCTCTGCACGTGCGTCTGGACGCTCGCTGGCAGCCCTTGTTGCAGCCAGACGCCAACTTTGGCTCACCCAAACCAGGGTGCCTGAGAGGGACAAGCCTCACCTCCTTGACGCACCCATCACTCCAGGCTTCACATTCGGCCCTGCAGTGGAGGTGATGTTGGAACGCTCCAGGAAAGCCACGGGAGAGTATCAACGGATGGTTCATGTCATCCCGCATCAGGGGCCCACTTCTACAGCTCACCGGCCCCAGCAAGGCCGTACCCCTATATCTCTTCCTGTCAGGCCTCCTGCCAATTGGAGCTGCCCTCAGCAGATGTCATCGCATAGGAAGAAGAGTTGGAGGCGCCCATCCCCTGCACGGTTTCAAGGCCCCCAGGGCGGCACGTAGACCTCCTAGTTGGCCACTCCTCACCCTTGAGACACTGCAGCAGTCACTGGCTTCCCCCTGCTCTGTGCAGCAACTCAACAATTTAGGATttaggattttttgttttcaacttatttttatatataaccacaagtgattgattaattaattactggggggtgggggattgaGAGAACgacttggggtgggggggcatggTAGTGAGAGCGGAGtgcttgtattttaatgttttatgttctttttcAACATTCTAGTTTTTGATTGGTCAGGTAGTGCACACATCTTGAATATAGCTTCAGGGATCCCTAAAAAATTgtttaaggaaatgtattacCACTCATCCTAATTGCACTGTGTGATACTGTGACTCAGTTTAATTccaagaggtttttttttcttcgtgTCACTGTCTTTAATACTAATTTAATAACTTCCAAGATGAAAAGACATGCTTGTCTAGTGCCTGACTAGGTTTGTTAAATGTGATTGCctgatttaattattcatcAAAAACCTTTGAGGAGTAAGGACCTGTATCTTTGAACATGAATTACCGAGCTGACCGCTTTGTGAAATTTAAAGTTTACTGTAAcacctttatatattttaagttaaatttgTACAATTACATGTAATAAACCCAGTTGAAACCTGAGAATGTTGCATATCAGAccagtgctttttgtttagtttcagaTTCACCATAAAATCCTGTCAGACTTCCGACAATCATTAAAAATGGTTATTTGAGTTAACGCGGCATTacaagataattattttttaagcctTTTCTAGGTAGTCAGGCAATGGAGTACTTGGACACATGcaatggagcattgtcctgcatatatagctctggaaaaaatgaagagactacttaacattgatttctgaacttggagtcgtcttttttttttttccagagctgtacatcaTGGTCCTCTTCAATGCTATGGACTTATTTTTGTACCACTCTTTGAACGTGTCTTCCAGAAACAGGCAGTAGTTTTGGGAGTTTATTTTCAGCCCATCTGCAACCCGAAAAGGTCCAGCTAGCTCATTGTTAATGATAGCAGCCCACACCATTACCCCACCTTGCTGGCGCCTGACTTGAACTGGTGCCCTGTGTCCATTACTGATCCAGCCATGGGCGCACCCATCTGGTCCATCAAGAGTCTCctctcatctgtccataaaaCCTTTGAAAAATCAGTCTTAAGGTATTTCAggttatgtgttttttgttttgtttttcagcaggGGTCATGTTTCTCTTCCTTGAGCACTTGACACCTTGTACTTCAGCTGATTCCAGGAAGGTTGCAGCTCTGAACAATGGCTTCACTGGAGGCTAAAGGGGTCCTGGAGTCTTTTGCAGTTAACTTGTGCCTTGTCTTCTCAACAAGTTTTTCGTGACTCACCTAACTATTACTTACAAAGCGTTTGATTGTGTGGTGATTACAACTCAATAGTTTGGAAAATTCAAAGGTTTTGCATCCTTCTGATGgcattttactttttccttttcagcatAAGTTAGATCCTTTTTCCTGCCAATTTTACCTGTGGTGAAAAAGCTGCCTAACTATGCACACATGAATATGAGGTATTTATCACTTTAAGCCCCTCTCTCTTTCATGAAGCAGTTATCACCTGAATGATTCTACCCACTAATTATTTAGGTTGACATGGTTTGGAGTTAGAAAACTGTGCTTGGAAATAAGTAATCAGAATACAGACTTGCCTAATTATGTACACACTGTACTTACTAACCAAGATAAATTACTTCTATTCTAAAGCCTCGATTTCGTGAAGCTTCTCAAGGGCCAAACACTTGATACATATGCCTTTATATTGACATTCCTGAACTGGCGGAGCAGGTTGATTCTTCCTGCTCTCTATGTATTGAGCGCTGCTTTGTCCCTTATGTCTGTTTTAACTTGTCCCTGTGGGTTGAGTCCACACTCCATCGCAGGCTGGATGCCCTGAGTACTGCTCTGTCCTTTTGTGTTGCCTGCTGTGACACTATTGACCGTCGGAGCAGGTGGAGTCTCTTGCTGCTCCATGTCTTGACACCAGCGGTATTCGCAGATGGCAGCTTCTACCATTTGAAGCACCGGGTGGCCATCAAAAAATCCATAGTGCGTTTCGTGCTGAGCCATCGACTGAGAAGACATCCCAGGGTTCTGTGGCTTGAGCAGCAGGTTGGGAAGATCAGGACAAGGAGAGACCTCTTCCCTCTTCCCACTGATCCCCTTTTCAAAGACCAGTGGTACCTGAGCAGTGCATTTGATCTGAATGTGGTGTCTGCCTGGGCGTTGGGCTTGACTGGAGAGGGTGTGGTGGTCACTATCCTGGACGATGGCATTGAGAAGACCCACCCTGATCTTGCTGCCAACTACgaCCCCCAGGCGAGCTATGACTTGAACGACAATGACATGAACCCCCAACCTCGCTACACTGAGGCCAACGAAAACAGACACGGGACTCGCTGTGCTGGGGAGGTAGCTGCTGTGGCCAACAACGCAGTGTGTGGTGTCGGGGTGGCCTACCGCGCACAGATTGGAGGAGTGCGGATGCTGGATGGTCAAGTGACTGACCTGGTGGAGGCCCGGTCCCTCGGCTTGAGCCCCCAACACATCGACATCTACAGTGCCAGCTGGGGGCCCCTTGACGATGGTATGACTGTGGACGGCCCGGGCAAACTGGCCAAGGTGGCTTTCATCAGGGGCATCAGCCAGGGGCGCGGGGGCCTGGGCTCCATCTACGTGTGGGCATCAGGGAATGGGGGCACCCACTTTGACAACTGTAACTGCGACGGCTATGCCAACAGCATGTACACCGTGTCAGTGGGGAGCACCACAGAGAACGGCACCGTGCCCTTGTACAGCGAGCCCTGCCCCGCCATCCTCACCACCACCTACAGCAGCGGCGGCAGGCATCAGCGGAAGATCGTCACCACGGACCTGCGGGGCACATGTACAATGCAGCACTCTGGGACTTCCGCCTCTGCCCCTTTGGCTGCTGGGATCATCGCGTTGGCCCTAGAGGCAAACCCCACCCTCACCTGGCGTGATGTTCAGCACATAGTGATACGGGCGTCTCGAGCAGCCGGCCTCAACGCAGATGACTGGAGACCCAACGGAGTGGGCCGAAGGGTCAGCCATTATTATGGGTACGGGCTGCTGGACGCGGGGAAGCTGGTCGATCTGGCCAGGAAGTGGAGCACAGTGCAGCCACAGAGGATGTGCCGTGTTGACATCGTCACCAGTCCGCTGGTGCTGCGGGGGCAGCTGCTCTTGAAGTGGAACGTGACTGCGTGTGCGGGAAGCGGGCAGTGGGTGCGGGGGCTGGAGCATGTTCAAGCACGGCTCTCCCTGAAATACAGTCGGCGCGGAGACCTGGAGATCTCCCTCACCAGCCCGCGGGGGACCCGCTCTACCCTCGTCAGCGCCAGGCAGGGTCCACACGCAAGCCCTGCCCCCTCACTGCACACACCGCAGCCACTGGCAATATTCTCTACCACTCCGTTCAACCCCCACCTTCTGTTCTTGAAGCCCTTAGACATGTCCACGCAGGGCTACTCTGACTGGGCCTTCATGACCACACACTGCTGGGACGAGGACCCACGGGGGGTCTGGACCATGCAGTTCGACGACAAGGGCGACTCGGCCAACACAGGCATGCTGTCCCACTTCCACTTGGAGCTGTATGGCACGGAGGAGAATGTGGCGGGGAGGCGTGTCGAGAGGACCGTGGTAGAGGAGTGCTTGGGTTGGAGCCCTAAGGGAGGCTGCCAGGAATGCCGATTCCCCTTGTTCGTGTTCGGCCGCATCTGCCTGCTGTCCTGTCCTCCGCACTACTACGAGTGGGGCCCCAATGGCACTGCAGGGCGGAGGTGCCTCCCCTGTCATCCCTCCTGTCAGCTCTGCGAAGGGGCAGGGCAGAGGAGCTGCAGGGGCTGCCCACCCTTCTCCACCTTTGACCCCAAGCTGAGCACCTGCAGCCCACCAGTCTACCCCTGGGATCGGGAGCACAGAGACGAGGAAGCGGATGATGCTGGGTGGGGATACAACATGTTGGTCTGGATTGTAGTCTTCTTCTTGATTAGTATCATTGCTTTCGTGCTTGCGTCCGATGTGTACAACAGCGAGGATCCGTGGCCCAGACATAGTTGGAGGGATAGTGAGATGGACACCGAGATGGACAACGAGATGGACACTGAGATGGACGATCTCAGCGTGTCCTGCTCCACTGTCTCATCCGAGGTAGATGAGATAGCCGAAGCCACAAAATAGCCACACTTCTTGTGACAATCAGCCATTTTATAAGAATTAGAGTAAATTTATACCAATGGAAGCTTTTTAAGTATTCAAATCCATATGATCATTTTTAACCCCCTGCTGTCCAACTTGGTGTACCTTTAGTGACGTTGATTTCAGGAATGCCCTTATTCTGTACagatgcaataaaaaataaaaa

Function


GO:

id name namespace
GO:0060536 cartilage morphogenesis biological_process
GO:0033334 fin morphogenesis biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0008236 serine-type peptidase activity molecular_function

KEGG:

id description
K08671 PCSK4; proprotein convertase subtilisin/kexin type 4

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00006080 True 6806 mRNA 0.52 15 15378222 15390581

Neighbor


gene id symbol gene type direction distance location
AMCG00006101 LOC106573875 coding downstream 196905 15161321 ~ 15181317 (-)
AMCG00006099 kank3 coding downstream 254894 15104332 ~ 15123328 (-)
AMCG00006094 NA coding downstream 274690 15098331 ~ 15103532 (-)
AMCG00006100 NA coding downstream 289314 15080401 ~ 15088908 (-)
AMCG00006098 NA coding downstream 300454 15074200 ~ 15077768 (-)
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding upstream 6671 15397252 ~ 15400964 (-)
AMCG00006079 arrdc2,LOC106573914 coding upstream 78660 15469241 ~ 15480318 (-)
AMCG00006082 NA coding upstream 92581 15483162 ~ 15488681 (-)
AMCG00006068 NA coding upstream 106172 15496753 ~ 15529324 (-)
AMCG00006067 upf1,LOC105907049 coding upstream 154257 15544838 ~ 15559349 (-)
G156028 NA non-coding downstream 10581 15366104 ~ 15367641 (-)
G156014 NA non-coding downstream 47676 15272813 ~ 15330546 (-)
G156003 NA non-coding downstream 60045 15207520 ~ 15318177 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding downstream 160588 15179051 ~ 15217634 (-)
G156002 NA non-coding downstream 165936 15204869 ~ 15212286 (-)
G156048 NA non-coding upstream 27397 15417978 ~ 15423850 (-)
G156049 NA non-coding upstream 36727 15427308 ~ 15431930 (-)
G156104 NA non-coding upstream 191276 15581857 ~ 15584766 (-)
G156113 NA non-coding upstream 224981 15615562 ~ 15615787 (-)
G156203 NA non-coding upstream 556627 15947208 ~ 15947527 (-)
AMCG00006102 slc5a5 other downstream 370243 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 593942 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 695242 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 868608 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 1036619 14336891 ~ 14341603 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 42851 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 563495 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1063703 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1114783 16505364 ~ 16521689 (-)
G156341 NA other upstream 1260959 16651540 ~ 16680772 (-)

Expression



Co-expression Network