AMCG00006085


Basic Information

Item Value
gene id AMCG00006085
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15778207 ~ 15784001 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006085
CAGGAAGCGGGAGGCGGAGTCGCAGTATGTAGCTGGTATTAAAACTAAGCGCAGGCAGGAGCGCTTCAgtgcgtgtttttttttatatggtgATTGTAAAGATGCAGCACCTCGTTCTCCTGGTTTTTGTGGCTTTGTGGACGGTGGAGACCAGCCTCTCCACACCGCTGTGCACGTACCCGCCGTCCCAGTGGTGCAGCTCGCCGGAGGTCGCGGCGCAATGCGGGGTGGAGAAGCAGTGTCTGGAGTTCAGTGGCCTCCACAAACCCCACACAGCTCCCGCCCCTGGCGTGGAGGTGGCTCTGTACTACGAGAGCTTGTGTGGTGGTTGCCGTGAGTTCCTGGTTCTGGAGCTGTTCCCGACCTGGCTGATGCTCGCAGAAATCATGAATGTGACACTCGTGCCATTTGGAAATGCACTAgaaaagaaaaatgggtCAAAGTATACCTTTGAATGTCAGCATGGAGAGGACGAGTGCAAGGGCAACATGATTGAGACCTGCATTATGAATTCCTCAAAATATGCTTTCTTCATAATTTTCTGCATGGAGTCGTCTAGTGATGTCCTTGGTTCTGCTGAGACCTGCCTGAAGCTGTATGACCCAGATGTGAAGTGGGATACCATCATGTCCTGTGTGAACGGAGATGAGGGGAACAAACTGATGCATCTCAATGCCCAGATGACCCAGGCACTGCAACCACCCCACGAGTATGTGCCCTGGGTGACGGTGAACGGGAAACACACTGACGACATCCAGGACAAGGCCATGGCTTCACTGTTCAACATGGTGTGCAGTTTGTACATGggGGATAAGCCACCAGCCTGCAGTGGAGGGAAGAAGTCAAAGCCCAAAAACTACTGTTGAACAGGAATTGAGTTTGTTGTGTATCAATATCGGGAGTCTTTCTTCCATGTGTAAGGGAAAAACACAAGGGGTTGCCACTTCATAGTGGATACTTTAGTCAACACTGTTTTGCTACTGCACTAGACTGCAAGCCATTTTGGATCCTCTTAAAATTTACAACAGGGCTGCTACATCACTCTTATCCATTAATGGCCCACCTGACCCCAGTAAACCAACCAATTCTGCCTGCTTAATTGCAcccatacaattaaaaaaaaaaaaaaaaaagcagccagTTTTTACTATGATGGAGAAGCCCCTGCAGATAGTTCGAGTACGTTCCCTATACATACCAGTATGCACCCAAAACCCTTTTGTTAAATTGATAATGACGAAAACGtgtattcagatttgttttggaaTATGTATACTAGATTACTATGACTTGGAACAATAAATGTTCCATAGAGCATTATAGTTTAAGGAAATTCCCCTCAATGTCCCTAAAACGTTAATACAATTTAGATTGGTCTCATTTCACGTTTAATTTGGTATAATTCTCTGGTTGATGTTAGGTTTACCAAACCCAGATTGATGCTATCTGCAAtttggggtttttgtttttgaatgtctgTGTAGTTGACATCCTTCaggggttaaaaaacaaaaacaaaacactattCTGAATCTCCTAAAGTCATTGTTTCTTGTAGATGTAAGATTTTGACTTGccctttattctatgacattgGGGCTTTCCAGGACAAAATTTGACAAGCACATATACAGAGTAGCACTTTTGGTTAGTTATTTTTGGGAGGTGGTGGGCAGTCAAATTGCACTATTCGTAATGTTCAGTGAGCCATACAATCAGATTTCTTAATCTACTGCAGCCACTGCCCTTGATCTTTCCCACTGAAGTCTCTTCTGCACTGAAATAGATAATGTGTACAGGGTGCATTGAGCTTCATATTCCAAAACTGGATTGTTTTAACCGATGTCCACATGATTTATAATACTACAGGGTTTTTAGAATTGGTCTTGATAAATGACTTTGTCTGTTGTAGTTTGTGTACTTGGCAGGGCCAGAAACTCTGAGCAAACCCtctatttgatttttttttttgtggctttTTCATCTCTCTGTTCTGCAGATCTGAAAGGTTCAGCTCCCTGTTATTGATCCATTAACATTTAAGTTTTATAGACTGTTGAAAAGTAAAGGGAGCAATCTGGTCAATATCTCGTTATGTTCTATGGAAATATCTTGAGTCTGCACATAAACTGGTTTATGTAACCTAAGGTGggatcatttgtttttgttttggtaaaatCACAGACCATGGTTTCTTGACACTAAATTATGataggatttattatttttttttttaatgggatgCAATAAGACCAGCATGGAGAAGTGAGGACTCGGTGTGATACACAACTTATTGATGAATCTGGtgccttttgttttctaatgAAATTCCTTTTATAATTtcccagtgtttgttttttataaaggACACAatggtctatatatatatatatttttttttttttaacaatcaaaggtgcatttaaaaatgctgtgtTTCAGTTGAGTGTGACTTGACTGTAAATGTCTTAAGACTGTCATTAGTGTACAGCTGCACAAAATGTCTCttttgaaatgtgcatttaggtgatttgtttgcaatacagaaatgtgtgtagGAATGCCATTATTCCTCTTTCAATTTATATATCCCAAAAATGACACATCCACATGCAGTGTGTGTAAGTTTGGTTGAAAGTTCAACACTGTCTAAGTACTTACTGACTTACAcctgaaatgttaaataaaaatgaaatgcacatttttgtatttttgacatTGCAATTTTTCTTGGTAAAGTCTTGGTATTAAGCAATAAATCTCTCC

Function

GO: NA

KEGG:

id description
K08059 IFI30, GILT; interferon, gamma-inducible protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006085 True 2766 mRNA 0.41 7 15778207 15784001

Neighbor

gene id symbol gene type direction distance location
AMCG00006075 NA coding downstream 1699 15773678 ~ 15776508 (-)
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding downstream 203520 15565462 ~ 15574687 (-)
AMCG00006067 upf1,LOC105907049 coding downstream 218858 15544838 ~ 15559349 (-)
AMCG00006068 NA coding downstream 248883 15496753 ~ 15529324 (-)
AMCG00006082 NA coding downstream 289526 15483162 ~ 15488681 (-)
AMCG00006086 NA coding upstream 5346 15789347 ~ 15818856 (-)
AMCG00006087 NA coding upstream 56911 15840912 ~ 15877424 (-)
AMCG00006116 comp coding upstream 217552 16001553 ~ 16012344 (-)
AMCG00006114 LOC107578059 coding upstream 240474 16024475 ~ 16031177 (-)
AMCG00006115 NA coding upstream 289362 16073363 ~ 16075726 (-)
G156113 NA non-coding downstream 162420 15615562 ~ 15615787 (-)
G156104 NA non-coding downstream 193441 15581857 ~ 15584766 (-)
G156049 NA non-coding downstream 346277 15427308 ~ 15431930 (-)
G156048 NA non-coding downstream 354357 15417978 ~ 15423850 (-)
G156028 NA non-coding downstream 410566 15366104 ~ 15367641 (-)
G156203 NA non-coding upstream 163207 15947208 ~ 15947527 (-)
G156207 NA non-coding upstream 210786 15994787 ~ 16000039 (-)
G156225 NA non-coding upstream 278732 16062733 ~ 16063072 (-)
G156228 NA non-coding upstream 282668 16066669 ~ 16071528 (-)
G156344 NA non-coding upstream 890797 16674798 ~ 16676047 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 286565 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 770228 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 993927 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 1095227 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 1268593 14509233 ~ 14509614 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 170075 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 670283 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 721363 16505364 ~ 16521689 (-)
G156341 NA other upstream 867539 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 1163996 16947997 ~ 16963650 (-)

Expression


Co-expression Network