AMCG00006089


Basic Information

Item Value
gene id AMCG00006089
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16123128 ~ 16145238 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006089
CAGACATTATTTCCTGAAACGGTGTTCACTTCGCACACCGGCGTGTTGGGTTTGGGGTCAAACAATCAGAAAGAGGAACTTGTGCAGAGTGGAGAAAGAGGACCCGACACCATGACATTTAACAACTGATTCGGGATTGTGGATCTGTGCTGTGGATAATTACATTATAGCAAAGGGATGGAGGACAGGGAGGATTTCAAAGCCCTGAGGGCCAAGTTTCATGTCAAGGCCGAGATGTCCGACGCAGGAGGAAGCCCAAGATCCCAGAATCCGTCCCCTGTTGGAAAACTGGTCCAGTTGCCCTTTGCATTGCCCGTTAACGGGACTCCGAGACCTAGGATGTCCCCTGTCGTTCCAAAACTACAGCAAGGATTACGGCCTTTTCAAGAGGCCCCAAGATTTCCTAAGCCCCCCTTGGCCGAAGCGGAAGCCCCTGCTGGGGAGAGGCCTCCCCCGCTGCCTGGTGTGTTCCCCAGGGCCCCGCCTTTGAGCCGGGCTTTCCCCCCTGAACCGAAAAACCTGGGGGACTCGGACAGCGGCACGGTCACATCTAGAGCCGGGGAGCTACGGCACAACTTCATGTTGAAGCAGCAGAGGACCCAGGAGGGGCCCATGCAGCCCCCCAAACTTCCTGTCGCTCTCACCCCACCCCTCCGCAACCAGAAGAGCAGTACAGACTCGGCGGCCCCACTGAGAAGACCCATGCCCCCCGAAAGCACCCTGGGACCCCAGCCCATCAAGCCCAAACGTCCCCCTCTTGTCAATCTGGATCATTTCAGGAAAGCCAATCCTAACCTAAAGCTGCCTGGAAGACCTGCCTTTGGGAAACCTACTGcttgcAGCAACTTGCCCCTTCCTGCATTGTGTACCCCACCAGGGCCACCAAGACCACTGAAGCCCAACACTTTAGTTCACCAGCAGTCCATCGAATTCTCCAATCAAGGTGACGAGGACAGCGATGAAAGTGAAGTGTACGAAATTGTTGACAACAACGGGAGTCCACCTCCTGTACGCAGCGGTAATGACAAGAAGAGGCAGAAGGAACTCAAGAGACAGCAGGAGCTGCAGAGGAAAGCGCAGAAAGAGCGGCAGAAGAAAGACAATGAGTATCGGAAGAAATTCAAGTTGACCGGTGCCATAGACGTGCTCCACACGGCAAAGGTGAGACAGAACTGGCGAGGGGGGAAGAATGACCTGTGTGTCCGTCAGGGAGAGAGTGTGGAGATCATCCGAGTTAAAAACAACCCTGAGGGGATGTGGCTGGCGCATGGCTACATCAGCAACACGTGTGTGGATGTGGACTACGAGGAGGTGAAGCGTAAAATCCGCAACAAGGTGTTTGAGTCACCCAACCCCGCGTGTGATGAGGACTTCTATGATGACGTGGGCTCCTCTGACCAGATGAACAGCAGCAGGAATTCTGACAATGAAGATGTATATGATGATGTACAGCCCATATCAGATAGTttccctcctccacctcctgaAATCTGTCTGAACACAATGTCactgaaagaagaaaaggaactgaggaaaacatttaagATTGAGGGGCCCATTGAGGTTTTGTGTCAGATGATGGTGGACCCCGAAGCCAAAACCAAGAAGGGTGGAGGCAAGGACCTGCCCGTGATTCCAACGCAGATTGTGGACGTCATCAGGATGGGCGAGAAGAAGGTTCTCTGTCGCAATGAACATGGGAAATATGGTTACATTCCCCGAGCTGTTCTCATGAAAGCggAAATTGACTCTTTGTACCAGACTGATTTTGAAATCTATGATAATGACTGACCACTCCCCCTCAACATCACCCTCACCCAGGACTGATGCCCCAAAATATTGATGAGTTGAACCCGGGACTGTGGAAGTCTGTATGAGGAAAACAGTTCCCCTTTGACAGCACAGTGACATTGGAGTAATCAGAAAGGACTGGGGAGGAGAGAACATTGTGTTTGGGTGCTTGTCAATACCTGAGAAATATTGAAGGAGAGACCCTACCTTTCTTTTGAACCATTTGGGGGAAGTCAGAACAACCTGTACAGTAGACTTTGCATAGAAAAAAAGCTATGACTTCTAAAAGACTATGGGACCAGCGATTATTGCAAAccgaacaacaacaacaatcaattTCACTGACAATTTTTGTGCATTCATGTGCCCCGCTGTAAATAACGtctgtggttttattatttttaatcacactAGTAAAGGgctatatttacacttgttttcTGGGGAGGAACTGCAGTCTTTCTGAcactgcaatgttttatttagatgtttgGTAAATGTTTTTACTTAGATTTATAACGAAGATTggcattttttccacagctaGAATTAGAAGTACAGTCCGATGCAGTCTTTGAAGAACGGTATATTTTGTGTTGCAGTGTCTGTTTTTGATGGGAAAGCATGCTTCATTTGGCCGCTGGGCTAGATGCCTTGTATGGTACTGTCTTTGCTCGATTTTTTAGTACTGTGCCACCTAGTGCTCTTCAAATACATGCACTAAAGTACAGAAACAAACcatgctgtttttaaaattgtttcatttattaCTGCAGTAATAAACACAAGAGATGTGGTTGGATAAGTTAGTGTTTAAGTGAGCCTTTTACCAGGTGCTTACGAATATAAGCCTCTTCTCttccattaaatgttttttgccTTCTTATCCATGTGTTCTGTCCTTCGAATAAGATATAAAACCAAAATCCTGCTGTAAGTCACTGGAAATTCACCGGGTCATGCAAAGTTCATCGGCCTGAAATCATAATAGAAATGTGTTGGTTTCAGTGTATCTGTTTAGGACAGACAAATTAACAACGGGGAGTGCCtatgtagatttattttatttatttattattatttgtcttggaacaaaaacttttttcccatAATACTAATAGATGCCATTAAAGTTCTGAATGTAGTTACCAATGTCTTCTGGCTGTGCTTTGTGCAACGGTtggtatttgttgttttgaaagctttttgtGTAACTGATCACCCTTTAAAAGTCACCCACATTACAAATTCGAGGAATTCATGTTTTATCATGATTGttaacacaaaaaactaaaaaaaaaaagcacttcaCCATTAATCACCTGCCGTTCCTGAACGCCGCCACAAGGTGGAGACATTGGGGtgtgaaaggaaaataactGATCGTAGTTTTCcctttcatgtttttgattttaattgaacagTAGGAATCTATTGTCAACTTAATATTAAAGGGAGACTTAACAACAGATGTGTATAAGTTTGCTTCAGACTATCTTattcaaaataagtatttcttaaaattaaattacttgtATTTCGTCGGGCGAAATAGGATACGTGTTTGAGTGTCTTTTACGTGacttctgtaaataaatatcaaatttgaaaggaaacgaaTGAATTAACAGCCTGTCATTTACAATATTTGAGATCATGGCCTACTTGTTTTTTCGTTTATCATTTAATTCTATTAAAATAGAGTGGGGGAGGGGaaggaaaattattaaatagaaaaagggtagaaagaaaaggagaggatTGCTTCTGAATTCCAg
>TU196796
GAAATAACGAATGTGTCCCCTTTGTTTCAGTCTGAACACAATGTCactgaaagaagaaaaggaactgaggaaaacatttaagATTGAGGGGCCCATTGAGGTTTTGTGTCAGATGATGGTGGACCCCGAAGCCAAAACCAAGAAGGGTGGAGGCAAGGACCTGCCCGTGATTCCAACGCAGATTGTGGACGTCATCAGGATGGGCGAGAAGAAGGTTCTCTGTCGCAATGAACATGGGAAATATGGTTACATTCCCCGAGCTGTTCTCATGAAAGCggAAATTGACTCTTTGTACCAGACTGATTTTGAAATCTATGATAATGACTGACCACTCCCCCTCAACATCACCCTCACCCAGGACTGATGCCCCAAAATATTGATGAGTTGAACCCGGGACTGTGGAAGTCTGTATGAGGAAAACAGTTCCCCTTTGACAGCACAGTGACATTGGAGTAATCAGAAAGGACTGGGGAGGAGAGAACATTGTGTTTGGGTGCTTGTCAATACCTGAGAAATATTGAAGGAGAGACCCTACCTTTCTTTTGAACCATTTGGGGGAAGTCAGAACAACCTGTACAGTAGACTTTGCATAGAAAAAAAGCTATGACTTCTAAAAGACTATGGGACCAGCGATTATTGCAAAccgaacaacaacaacaatcaattTCACTGACAATTTTTGTGCATTCATGTGCCCCGCTGTAAATAACGtctgtggttttattatttttaatcacactAGTAAAGGgctatatttacacttgttttcTGGGGAGGAACTGCAGTCTTTCTGAcactgcaatgttttatttagatgtttgGTAAATGTTTTTACTTAGATTTATAACGAAGATTggcattttttccacagctaGAATTAGAAGTACAGTCCGATGCAGTCTTTGAAGAACGGTATATTTTGTGTTGCAGTGTCTGTTTTTGATGGGAAAGCATGCTTCATTTGGCCGCTGGGCTAGATGCCTTGTATGGTACTGTCTTTGCTCGATTTTTTAGTACTGTGCCACCTAGTGCTCTTCAAATACATGCACTAAAGTACAGAAACAAACcatgctgtttttaaaattgtttcatttattaCTGCAGTAATAAACACAAGAGATGTGGTTGGATAAGTTAGTGTTTAAGTGAGCCTTTTACCAGGTGCTTACGAATATAAGCCTCTTCTCttccattaaatgttttttgccTTCTTATCCATGTGTTCTGTCCTTCGAATAAGATATAAAACCAAAATCCTGCTGTAAGTCACTGGAAATTCACCGGGTCATGCAAAGTTCATCGGCCTGAAATCATAATAGAAATGTGTTGGTTTCAGTGTATCTGTTTAGGACAGACAAATTAACAACGGGGAGTGCCtatgtagatttattttatttatttattattatttgtcttggaacaaaaacttttttcccatAATACTAATAGATGCCATTAAAGTTCTGAATGTAGTTACCAATGTCTTCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006089 True 3569 mRNA 0.45 15 16123128 16145238
TU196796 False 1491 TUCP 0.40 5 16140544 16144623

Neighbor

gene id symbol gene type direction distance location
AMCG00006088 NA coding upstream 2225 16104381 ~ 16120903 (+)
AMCG00006112 NA coding upstream 73304 16047776 ~ 16049824 (+)
AMCG00006104 klhl26,LOC106613638,LOC106573902 coding upstream 166028 15947208 ~ 15957100 (+)
AMCG00006105 NA coding upstream 196568 15924629 ~ 15926560 (+)
AMCG00006106 NA coding upstream 204537 15906189 ~ 15918591 (+)
AMCG00006141 NA coding downstream 529548 16674786 ~ 16680552 (+)
AMCG00006148 NA coding downstream 546343 16691581 ~ 16696873 (+)
AMCG00006142 tmem259 coding downstream 562370 16707608 ~ 16722360 (+)
AMCG00006143 NA coding downstream 578054 16723292 ~ 16731231 (+)
AMCG00006125 dapk3 coding downstream 763278 16908516 ~ 16917980 (+)
G156155 NA non-coding upstream 289834 15833079 ~ 15833294 (+)
G156130 NA non-coding upstream 311017 15778199 ~ 15812111 (+)
G156082 NA non-coding upstream 517249 15561603 ~ 15605879 (+)
G156042 NA non-coding upstream 691189 15430476 ~ 15431939 (+)
G155974 NA non-coding upstream 935903 15185874 ~ 15187225 (+)
G156279 NA non-coding downstream 318770 16464008 ~ 16467676 (+)
G156302 NA non-coding downstream 359532 16504770 ~ 16505206 (+)
G156321 NA non-coding downstream 454294 16599532 ~ 16599858 (+)
G156326 NA non-coding downstream 480320 16625558 ~ 16627713 (+)
G156329 NA non-coding downstream 499209 16644447 ~ 16644849 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 56230 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 87159 16032892 ~ 16035969 (+)
AMCG00006107 LOC107709901,LOC107680255 other upstream 134353 15964433 ~ 15988775 (+)
AMCG00006065 lsm4,LOC106613629 other upstream 538367 15578084 ~ 15584761 (+)
G155932 NA other upstream 1015394 15107209 ~ 15107734 (+)
G156327 NA other downstream 482555 16627793 ~ 16629182 (+)
AMCG00006149 NA other downstream 977967 17123205 ~ 17127633 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 1516952 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 1600895 17746133 ~ 17764228 (+)
G156640 NA other downstream 1828503 17973741 ~ 17980637 (+)

Expression


Co-expression Network