AMCG00006090


Basic Information

Item Value
gene id AMCG00006090
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15181964 ~ 15185213 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006090
CTTCCTGGTTGATAGTGTAGTGGGGTAAATGTGAGGCCGAAGTCCAAAGACAAATTTTGAGTTCTGCTGGCAAAGTTATGCAACATTGACTCTGTTTCATAAATTATTGTACGTTattattgtacaaaaaaaagcGTTACGGCATGATCTCGCTTCTTTGTAACTGATTTTTTTACGTATTTATTGTCTTTGCCAAGCTGGTAAAGTAGGCAAAATAAACATGCCAGGTTCAGTGGAAGCATTGGTAAACGTGCTGGAGTCGTACAGAGGGCGAGACAAGCTGGTGAGGACGCTGTGCTATGGCTCCCAATTGGTCGGTGGGGTCATTTCCCAGAAGGCAAGAGGGCAGTCGAGTCTGGGGAAGAGTCTGCTGCTGTTTTCGGCCCAGCTCAGCCACTGCCGCACCGTTCTCAGACTGTTCGACGACCTCTCGATGTTTGCTTACTCGAGGAGCATCGGGCTCGGAGCCGCGGAGGAAGACCCTGGATTGCGCTGGATGTCTGTGCTCAACAACCTGGCTGACCAGCTCTACTACCCCTGTGAGCACATAGCCTGGGCAGCAGACGCTAAGATCATCCGGGCCAAGTCTGACAAATGGTGGACGCTGAGCACAGCATTATGGGGGATTTCCCTACTGTTGGGGATTCTCAGGTCTCTCCGAATTCTCTTGTTACTGAGGaggaaactgaagaaaaacgAGAGAAGCCGACAGCGGGAGTCCAGCGAGCCAGGGGTCCAGGCCGGCTTGGAGCTCAGACAGATACGCAGTGAAGTGCTTAGTGTGGCCAGTAGCATGGCGGATCTGGCCAATGCAATCCACTGGATGCCCCCTGGATTCCTGTGGGCTGGACGCTTCCCTGATTGGTTGGTGGGACTCCTGGGAACGACCTCTTCGCTGATTGGCTTGCATCAGATGTGCaccggaggaggagggggtggtgtCTGAGAGGCGTGGTTTCTGTTCGGAGCAGCCAGCGGATTGGAGCACAGCGCTGTCCATCAACGACGGGAAATTGCAGCGCAACCTAATGACTAATGATAGAAAGTGCTACAGTTGTTTTCCTGTGACTTTAGAGGGTTCCCCATTCCTGCCGAAGCAATACAGCACAAGATTATCTATGACACACATCTTAATTTGACTGTTTCTCAGGAATAGACTTGAATCTTGTTCAATGGGATAGTGAGTAAGACTAGTTTGGAATGCACTCTCCACttttaagtttgtttaaaatcCTTCTAAGAAGAGCATACAGACATTACACATTCTTGTTCAGTTTTACACCATGCATTTGGAGACGTAGTTTACCATTGTGTAGTTCAGCTGCACTTCATTCCAGAAATTGGAAATGAATTTAAagccacacatacacattttgtCAACCATTCCTATAACGGAATCATCAGCGGATTCTCGACTATTTACCCAAGGACCTCAGTTCTTTACTGCGGAACGGCGCCCATTGAAGAAGATGGACTGACTGTCAGGCCCGGTGGCAGGCAGCATTTTGGGAACAAGCTGAACCAGAGGTCCTCATCTTTCTGGTCACATCTAGGGTTTCCTCAAAAGCATAACTCGGGGCATGTTTTGTTGCTCTTGTGCTCTTGTGCTCTGATGTTCACTGGTGATGTGAAGCTCTTGTGCCAACTGAAGTTTCAATTGACCAAGGTGCTGTTCCCAATATCCACCTCTAGAGGGAGTGTATGTATCATAAACTGTGTGGTATTTTACAGACCTGTAAGATCTGAAACTGCACATTACTTACATATATATGACTTAAAACCTCTCCAAGACCAAGCCTTAAGACTACTACAGCTCTCGGAGTAGGACTAATAGGAAGTAGgcagattcatatttttaaaatcaattgtaGATCTAGTAAAttgaaaaaaagtaattgttttatcTTCCACCATGAATCACttgtttatttcacagtttACTATTAATTTGCTTATTCAAATTAGTGTTCATTTACCTTCGATCCAGGGTAACCTATACTCACTGTTAAGATTTGTCATGGCAATGCAAAAGTCTGAAAAGTGAAagatggaataaaaacaaacatatgtaCTAA

Function

GO:

id name namespace
GO:0016559 peroxisome fission biological_process
GO:0005779 integral component of peroxisomal membrane cellular_component

KEGG:

id description
K13353 PEX11C; peroxin-11C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006090 True 2075 mRNA 0.46 5 15181964 15185213

Neighbor

gene id symbol gene type direction distance location
AMCG00006091 NA coding upstream 25459 15148938 ~ 15156505 (+)
AMCG00006093 NA coding upstream 85127 15092017 ~ 15096837 (+)
AMCG00006030 NA coding upstream 140037 15018786 ~ 15041927 (+)
AMCG00006031 NA coding upstream 190606 14990894 ~ 14991358 (+)
AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding upstream 333826 14838689 ~ 14848138 (+)
AMCG00006070 LOC107661085,LOC108271288 coding downstream 3011 15188224 ~ 15196741 (+)
AMCG00006071 cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261 coding downstream 19641 15204854 ~ 15215919 (+)
AMCG00006072 NA coding downstream 44752 15229965 ~ 15271081 (+)
AMCG00006048 NA coding downstream 105443 15290656 ~ 15298380 (+)
AMCG00006051 NA coding downstream 116551 15301764 ~ 15306184 (+)
G155934 NA non-coding upstream 70789 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 72768 15107994 ~ 15109196 (+)
G155931 NA non-coding upstream 75561 15105595 ~ 15106403 (+)
G155929 NA non-coding upstream 78585 15100320 ~ 15103379 (+)
G155913 NA non-coding upstream 126007 15050855 ~ 15055957 (+)
G155974 NA non-coding downstream 661 15185874 ~ 15187225 (+)
G156042 NA non-coding downstream 245263 15430476 ~ 15431939 (+)
G156082 NA non-coding downstream 376390 15561603 ~ 15605879 (+)
G156130 NA non-coding downstream 592986 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 647866 15833079 ~ 15833294 (+)
G155932 NA other upstream 74230 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 76397 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 522467 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 757218 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 798384 14375995 ~ 14383580 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 392871 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 779220 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 847679 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 868822 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 937915 16123128 ~ 16145238 (+)

Expression


Co-expression Network