AMCG00006091


Basic Information

Item Value
gene id AMCG00006091
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15148938 ~ 15156505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006091
ATGAAGACCACACTGGCAATTCTTGCGCTTTTCATAGCCACCCTGCTGGAGGTTAGCACGGGCTTCCCCGGGTTCGACAGGAAGGGGGCTGCAGGGAAGGAGAAGAAGGTCCAGTTCGCCTCCTGGGATGACGTGAACGTGATTGCCCATGGACTGCTGCAGCTGGGCCACGGTCTCAAGGAGCATGTGGACAAAACTAAAGGCCAGCTCAGGGACATCTCGGTCAAGCTCAAGACCTTCAACGGCACGGTGACCGAGCTGAGCCGCCAGACCCAGAGGCTGCAGGAGGACGGGGAGGCACTGAAGGCGAAAGCTCAGGGGCTGGAGGATAGAGAGAGCCTGGTGCTCAGCGTCTCGACCGAGCTGAGGCAGAAGGCGGAGGAGATGCAGAGGGAGGGGCAGACCGTCCAGGACAGGGTGAGCAAGCTGGAAGAGAAGGTGGACGGACTCCTGGAAGGTCAGGGGCAAGAGGGCAACTGGATGCTGGAGGCACAGAATCGGCGCATCGATGACCTGGTGGAAAGGATCAGACAGCAGCAAGACAAACTGGACAAGCAGAACATCCGCATCAAGACTCTTCAGAGCCAGATCCACCAGAGCAGAGCTGCCAGTCCAAAAATTAGAGCTTTCCTGGGACGCAAATTGGAAGAAGTGGCCCTCAATGGCAGCACCGAACAAGCCGATGCGCCTAATGACATGGCTCCAGACTGCCACGTTCTGTTCCTGAGAGGCGAGAGAACCAGCGGAGTCTACACCATTCAGCCTCACAACACCGAAGCTTTTGAAGTCTACTGCCAAATGACGTCTGAAGGCGGGTGGACGGTCCTTCAAAGGCGCCTGGATGGCTCGGTGGATTTCGATCAGCTCTGGCAGGCGTACAAGACTGGCTTCGGCAGCCTGGATGGCGAGTTCTGGCTGGGCCTGGAGAAGATTCACATGCTGTCCCAACAAGGGAACTATATGCTGCAGGTGGAGCTGACAGACTGGAGTGACCAGACCAAGTCCATCCAATACCCGTTCCATCTCAGCGGAGAGGATGCCAGCTATGCTATGCACCTCCACGGGAGTTCCCCGAGCAACCAGGACAGCGCGATGAGCACAGAGCCCACTGGTCTTCCTTTCTCCACCCGAGACCGGGACCACGACCACAAGCCGGACATGAACTGCGCCAAGCAACTCACTGGCGGCTGGTGGTTCAGCAACTGCGGACGCGCCAACTTGAATGGCAAATACTTCAGCAGCGTACCACGCGACAGACACGCGCGGAAACAGGGTGTGTTCTGGAAGACCTGGAGGGGGCGCTACTACCCGCTGAAGACCACCGTCATGATGATGGCTCCTGCCAAGGTTGAGTACGACTCGTAA

Function

GO:

id name namespace
GO:0009617 response to bacterium biological_process

KEGG:

id description
K08767 ANGPTL4, PGAR; angiopoietin-like 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006091 True 1365 mRNA 0.58 7 15148938 15156505

Neighbor

gene id symbol gene type direction distance location
AMCG00006093 NA coding upstream 52101 15092017 ~ 15096837 (+)
AMCG00006030 NA coding upstream 107011 15018786 ~ 15041927 (+)
AMCG00006031 NA coding upstream 157580 14990894 ~ 14991358 (+)
AMCG00006040 nr2f6,LOC108238456,LOC103359430,LOC101171737 coding upstream 300800 14838689 ~ 14848138 (+)
AMCG00006041 NA coding upstream 321411 14819668 ~ 14827527 (+)
AMCG00006090 NA coding downstream 25459 15181964 ~ 15185213 (+)
AMCG00006070 LOC107661085,LOC108271288 coding downstream 31719 15188224 ~ 15196741 (+)
AMCG00006071 cnn2,LOC107688471,LOC107585101,LOC107550622,LOC107709904,LOC107680261 coding downstream 48349 15204854 ~ 15215919 (+)
AMCG00006072 NA coding downstream 73460 15229965 ~ 15271081 (+)
AMCG00006048 NA coding downstream 134151 15290656 ~ 15298380 (+)
G155934 NA non-coding upstream 37763 15109593 ~ 15111175 (+)
G155933 NA non-coding upstream 39742 15107994 ~ 15109196 (+)
G155931 NA non-coding upstream 42535 15105595 ~ 15106403 (+)
G155929 NA non-coding upstream 45559 15100320 ~ 15103379 (+)
G155913 NA non-coding upstream 92981 15050855 ~ 15055957 (+)
G155974 NA non-coding downstream 29369 15185874 ~ 15187225 (+)
G156042 NA non-coding downstream 273971 15430476 ~ 15431939 (+)
G156082 NA non-coding downstream 405098 15561603 ~ 15605879 (+)
G156130 NA non-coding downstream 621694 15778199 ~ 15812111 (+)
G156155 NA non-coding downstream 676574 15833079 ~ 15833294 (+)
G155932 NA other upstream 41204 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 43371 15103456 ~ 15105567 (+)
AMCG00006034 vmac,LOC106573562 other upstream 489441 14652199 ~ 14659497 (+)
AMCG00006022 NA other upstream 724192 14420382 ~ 14424746 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other upstream 765358 14375995 ~ 14383580 (+)
AMCG00006065 lsm4,LOC106613629 other downstream 421579 15578084 ~ 15584761 (+)
AMCG00006107 LOC107709901,LOC107680255 other downstream 807928 15964433 ~ 15988775 (+)
AMCG00006111 smim7,LOC106573893 other downstream 876387 16032892 ~ 16035969 (+)
AMCG00006113 slc35e1,LOC106573890 other downstream 897530 16054035 ~ 16066898 (+)
AMCG00006089 NA other downstream 966623 16123128 ~ 16145238 (+)

Expression


Co-expression Network