AMCG00006097


Basic Information

Item Value
gene id AMCG00006097
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15050921 ~ 15060761 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006097
ATGTACAAGATCCAGGTCCTGGGAACAACCAGCTCCCCCGGCGAGATCCCAGCTaGTGCAGAGATGAGATGGAGAGCTCGCTATTTGGAGACAGCTCTGCTGCTTGTGGTCGCCACCTTGTTCCTAGTGTTCTTTTACAGAGAGGACCTTACCGGGGAGCTGATTGTAGGCAGACGAACCACTCTAGTCACGGCTGCACCGCTCCCCGAAACCGTCAGATTCCAGCTGCCTTTGAAACCACCGTCTCCGTGTGAGGTGAACGCCACTGCCGCCAACATCTCTGGTTTCGCCACCCTCCCAGAGAACATCAAGAACTTCTTGTGGTACCGCCACTGCCGCGAGTTTCCCATTATCCTGGACGTTCCCGAGAAGTGCGGAAAGACGCCAGAGGATTCGGTGGATGTCTTCCTGCTGCTGGTGATCAAGACCTCTCCGGGGAACTATGACCGCCGTGAAGTGATCCGGAAGACGTGGGGGAAGGAGCGGCTGCAGGACGGCGTGTGGGTGCGCCGCCTCTTCGTGGCGGGGGTGGTAGGCAACAACCGGGAGAGGCGCAAGCTGAACCGCCTCCTAGAGATCGAGCACCGCGAGTACCAGGACATCGTACAGTGGGACTTCGACGACACGTTCTACAACCTCACTCTCAAACAGCTCCTCTTCCTGGAATGGATGGAAGCCCGGTGTCCCGAAGTCCACTTCCTGCTCAACGGTGATGACGACATCTTCGCCAACACCGACAATATGATACAGTACTTGCAGGGCTTGGAGGGCAACGACGGGAGCAAACACCTCTTTGCGGGCCACCTCATCCAATACGTGGGCCCCATCCGGGAATCTGGCAGCAAGTACTACATCCCGGTTCAAGTCCAGGAATCCAACTCGTATCCTCCGTACTGTGGTGGAGGGGGCTTCCTTCTCTCTAGGTATACTGCTAGGACTATCTACAACATGTCCTTCTCTATTCCCCTCCTGCCCATTGATGATGTTTACATGGGTATGTGCCTGCAAAAGGCCGGCCTACGCCCCGAGTCACACGCCGGGGTTCGTACCGCAGGGCTACACGTGCCCTCTCAAAAGTTTGACTCTTATGACCCCTGTTATTACCGGGAGATTCTGTTGGTGCACCGGTTCCTGCCGTATGAAATCTTAGTCATGTGGCAAGGTGTCCATGAGCCCGGGCTCAAATGTGGCATTTTTGCATCGAAGCATCTTTAGCACTTTCCACCCAGCAAACTAGTATGGACCTCTCCAAAAGACAAGTTTTCCAGATGAGATATGGGCTGCACTGTGACCCACTTTCCTGACTCTGTGTCTCTGAGCCTGACACGTGGTCATGTTGCCCAAgacattctgtatttgtttgtgggtttttgttttgttgcttggAAGCCGAGAGcctacatttctgttttgctgaGGCTGGCGTTGTGAGGAAGCTGTTAATTCAAGCCATGCCAGAAAAGTGTCACCAGCAGTTACTAAGGTCTTCCTGTTTTGCCTCAATTGGGGGAGGGGAATGTGTTAAGCTTTATTGTTGGTAAAAGAAAGaatctataaatacataaagccAGTACACACTCATTTGTTGTCccaactttttttaaatctttttttttttttttcctgtgaccTGTAATATTAAATGCCTGTTGTCATATGACTTTTTCAATCCTGCTGTTGGCAAATTTGGTAAAGGCACTGGAACAACATTCTACTAAATAAATTGGTGATTTTTCAGTGCTTCGTATTTGTCTACAGCAGGAGGATTTTGCTCCTACACTATGCAATTAACTGTTGCTGTTGTTCATTGTTGACTTGTTTGATGTTGGACTTTGCATCACCACACTACCCTCAATTaaggaataaattaataaatcggAGGTACATGCCGCCTTTAAAACCCTCAAAAGAATTTAGCCTTTGCAGCTTATTGGGAGACTGTTTTAGCTGCATTGGACATGTTTGTCTCCAGTCATCTTCAGGAAATCCATGCAATTGCTTTGTTTCAGAATGAGATGGTTTATTCCCTccatgattgtgttttttggcCTCCATTTCTAATATGACAGTTTGTATAGCATTGCCAAGACTAACCATCATACTCCGGCGGGGGGGCGGGAATCgtaatattttattcacacCACAGTTGGACGGAAACCCCGTCTTCCCACCTACTTGAAAGGTTTTCAATTCggttcaatttttatttgtatagcacccttcgcaaggtagccacagagtgctttacagagtggtaaacatacaacagaTATACAGCAGaataaaagaatacatacataatacaataaagtaaaataaaaatagacctctaacagtttaaatgatctaaaataaagtaaattaacatttaaataaaccatttaggcacgggggaaaagaaaaatagctcgtcagaccttggggtgtgggtgtACCGTTAGCCCTCCGTGGTGGGGGTCCTCTGAggtgggttgtgcctcgtcGGGCTTCGacggtgggggacgaggtgcctcatcgcaccctcagagggggctgttgctggaagacaaaaagacaggtgtgctcagatactggtcatgcagtgcaggacatctccaaatacaattgtgcattgcatgtccatggcacagcggcggcactatgggctagaaaaacagaaactaaacagatgagtcttcagccacgatttaaaggctaagacagagtgGGCATTACATTGGCTGAGAGATCATTCCTCAGTtttggggccctataactgaatgctctcccacctgcggttttcttgtgtattttagggagcactaagtaaccggcttcctgggatctcaatggctgacctggagtgtatttgaTAAGGAggtcttttaagtagggaggtgccagtccctttagtattttaaatgttaataagagaacTTAAAAGTCTGTCCTATAGTGCACGGGCGGCCAgcgaagagaagccaatactggagtgctgtgatcatgtgtttttgttttaattagaattcTGATTTGaataactgaagtgcagaaacaGCTTgatttgtgctgcctgacagaattgCATTAGAGCAGGGGTTCCTAAAGTGCGGCCCGGTGGCCAAATGTGGCTCTCAAGGATGATTGGTGCAGCCCCCCAAAGCccaccttcaaccaccccttttctgaacatttactatatttatatagtgggacattttgttttcatcagtggttcattttctacttggccccccccatcccatgcaacctccggaaattggccctccatcaccaaacattgggaacccctgcattagagtaatccaatctagatgtaacaagtGTGTGTATCAATTTCTAAATATcgtgtaatgagaggaattgtcttagaattgtctagcaatgtttctgagctggaggaaggaagatctcgacacattctgattCTGTGTGATTCACAGGATTAtggtcacagatgacacccaggttctGTGCAATCTCCTTAGGCGAGAAATTAAAGTtgtcattactcagttttgtcagtgtgtgaTGAACAGATGGATTTTTGTCCcgtaaaattaggacttctgttttatcagaattaagcataagaaaatgacttgtcatccatgttttaatctcggaCAGACAACAGATTAGTCTTTctatgtctatggtattgttagggtttactgacaaatataattgtgtgctGTCTGCGTAattgtgaaagttaatattgtCGTTGAGTGATATCACCTAATCCAGTAATTTCTAACTGGACGTCAGGCCCTGTACAACTGGTGAGGTCGTGGTACAGAGATATCTGGGTTCCTAAAACCTTATCCTctgttacatttgaaaatgtctcaAAGTGACAAAAGGcagtgaatttgtttttctttctcaaaggTCACTGAAACAAGCATATTGCCTCTTTCCAATTTTTAACTTCCCATCCTCGGTCTGCTCAGCAATTCCATAGCCTAACATGCTTCCTGCCCTTCCTATCCTGAATCATTTGCCTGCCAAggtaatcattattataattcttatttgtaattgtgttgtaaCTATATACTCCTATATATAATGCTAGGGGGACTGCAACTGCAGTTGGATCAATGGTAACTGTTGTCTTGATTTGTCTTTATAAGATGTGACCAAGCCTCTCAGGGTGTTTTTGCTGACAATGTAatgaattgaatgtattttttggtaTCCCCTCGTTCACTGTGGATAAGCAGTAATGAGGTAggtataatatattttcagattttccaaTCTCTTTGCCTTGCACACTGCACTTATGAAATGTGGAGACATCCCGAACCTCGGGCAATAATTCTGAACTACAAAGCAGAGCACATGGTACCAACCTGGTATTAAAGGTGTGTCTGATCTCTGTTCTCCAGATTCTTTGATTTTACTGACGTTACCTTTGTTGTTCAAACTATGCAACACTAGCCAATCTTGAATTAAAGAATCCTTCAATATATGCAGTCAAATACAACTATTCAGAAACTGAAGGCatgttttgtactgattgtgCATACTGGTAAAAGGGAAATAAGCTTTTCAACCACAATGTTTTAAAGTCTTACATTTTCTGTCCTTGCACAATCCTTAAaattgctgtatttatgtatttattctaaataaatgtatcaagaTTTCAACCTCGGTGCAATCAGTCTGACTATGGGAATGAATGGGTGACTGATTTGAAATTGTTCtccctaaaataaaatgatcaaaga

Function

GO: NA

KEGG:

id description
K07970 B3GNT3; beta-1,3-N-acetylglucosaminyltransferase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006097 True 4742 mRNA 0.44 2 15050921 15060761

Neighbor

gene id symbol gene type direction distance location
AMCG00006095 NA coding downstream 6430 15042183 ~ 15044491 (-)
AMCG00006103 NA coding downstream 19118 15030987 ~ 15031803 (-)
AMCG00006096 NA coding downstream 58660 14981801 ~ 14992261 (-)
AMCG00006033 LOC107589798,LOC107718068,LOC107722564,LOC107585128 coding downstream 119536 14920403 ~ 14931385 (-)
AMCG00006032 NA coding downstream 143763 14889140 ~ 14907158 (-)
AMCG00006098 NA coding upstream 13439 15074200 ~ 15077768 (-)
AMCG00006100 NA coding upstream 19640 15080401 ~ 15088908 (-)
AMCG00006094 NA coding upstream 37570 15098331 ~ 15103532 (-)
AMCG00006099 kank3 coding upstream 43571 15104332 ~ 15123328 (-)
AMCG00006101 LOC106573875 coding upstream 100560 15161321 ~ 15181317 (-)
G155899 NA non-coding downstream 69300 14980384 ~ 14981621 (-)
G155783 NA non-coding downstream 481085 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 558992 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 626175 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 680739 14369761 ~ 14370182 (-)
G155957 NA non-coding upstream 39548 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 118290 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 144108 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 146759 15207520 ~ 15318177 (-)
G156014 NA non-coding upstream 212052 15272813 ~ 15330546 (-)
AMCG00006102 slc5a5 other downstream 42942 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 266641 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 367941 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 541307 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 709318 14336891 ~ 14341603 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 372671 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 893315 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1393523 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1444603 16505364 ~ 16521689 (-)
G156341 NA other upstream 1590779 16651540 ~ 16680772 (-)

Expression


Co-expression Network