AMCG00006100


Basic Information

Item Value
gene id AMCG00006100
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 15080401 ~ 15088908 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006100
GCCTGTCAGAGGAGGGCAAGCATGGTGCGCGGCTGCGCTGTCGGTCACCTCGGAGCgctctttctctttttacaaGTGCAGACCTGGCCTTGCACCTGGGGTGTTGCAGGTGGCCCTGTGCAAACATGTGAGGAGAGTCAGTTTCCCTGTGCCAATGGGAAGTGTATCCCGAAAATATGGATGTGCGATGGAGATAAGGACTGTGAAGATGGCGGAGATGAGGCGCATTGTTtAGAGCGGATGTGTTCAGGGTTTCGCTGTCAGGATGGGGTCTGTATCTCCCAGACCGGGCTGTGCGACGGGCATGCTGACTGCAAAGACGGCTCAGATGAGCTTGAAGACAAGTGTGCCTTTTCCTCAGATTGTAAGCAAGATGAGTTTCTGTGTGGGAACGGACGCTGTATCTCCACACAGTTCCGCTGTGACGGCACGGACGACTGCGGCAATGGGAGGGACGAAACCGACTGCCAGAATTGTACAGCCGGCTTCTTCCACTGCCTGTTCTCCGGCACCTGCCTCCCCACGAGCAAGCTTTGTGATGGCAGCGCCGACTGCCCGGATGGCACGGATGAGTCGGGGCCGGGATGCGGCCCCCCTCGGCAGCCCCCTGCCACCTGTCACAACTCCGAATTCAGATGCGAGTCGGGGGAGTGCGTGCTTCAGTCGTGGAGGTGCGACCACTCCCCGGACTGTGTCGATGGCAGTGATGAAAAGGACTGTGATCGCAATGAGTGCCTGGAGGACAACGGAGGCTGTTCCTACCTGTGTGTGGACGAGCCTCTAGGCTTTGTGTGCGACTGTCCCAGCGGCATGAGGCTGGTGAGGGACACGGACTGTGAAGAGATCGACGAATGCCTGGATGCTGATTTGTGCAGCCAGCTCTGTGTGCACCTCAATGGGACCTACAGGTGTAAGTGTCATCCTGGATACCTCAAAAACCCCAGTACAGAGGATTGCAGTGCTGCAGGCGAGGAGGCCCTGGTGGTCTTCAGCAGCTCGGTGGGGGTGCGGAGGATCAACTCTGGGAGCCACGAGTACCGAGGAATTGTGGCGGGAGTGCTGGAGCCGGGACCTCTGGCCCTTGATATCCCAAACCGTACTGTGTACCTGGGCAGTCGGAAACAGGGCGCCATATACAGGATGTCGCTGGACAAGACTTCTCAGGAGCCTGTGCAGGTGTTGAGTGGCATAGATGCTCCTGTGGGGTTGGCAGTGGATTGGGTCCATGGCCTACTATACTGGACTGATGCCCGCACCCGGTCTGTCAATGTTGCTCTGCTGGATGGGGCGAAACGGCATCTTCTGATTGGTGGGTTATCGCAACCAATGGGTGTAGCTGTGCAGCCATTGTTGGGACTTCTGTTTTGGTCAGATGTTGGCCGGCCTGCTAGGATCGAGCAGGCTGGTATGGATGGGCGAAACCGGGTGGCACTGGTCACCTCTGCCATCCAGAGACCCGTGGCCATCACTCTTGACATGCCACGCTCTCTCCTGTACTGGGTGGACTCAGGGCTGCGGACAGTCTCCCGGATCGGGCTGGACGGGCAGCACCGCAAGATCGTCGTGGAATCAAACGGCTTCCTGGACAGACCGTTCGGACTGGCTGTGTTTGAGgaccaggttTTCTGGGCCGACCAGGACACTCGGGCCATCTACAGAGCCAACAAGAGGAGCGGCGCCAATGTCCGGATCATGCTTAACAACACGGGATCCATGTGGGGGCTGGTACTGGCTCATCCCGTTCTGCAGCCCGAGGgCCGCAGTGTATGTGTGAGCTCGGGTCTGCTCTGCCCGTTCCTGTGTGTGCCACAACCGCGCTCCGGTGCCGACACTGTGGGGTACGCCTGTGTGGGAACAGAGACGCCAGTCCAGAACAGCAGCGCACCTGATACAGATCCCAGTGAGTCGCACCCAGTCCACCCCACAACCTCCACTGATGGCACTTTCATCGCAGTGCTTTCCCTAATTGTATTCCTCAGCCTGGTCCTGACCGGGGGGGTACTCTGGAGGGCAATGGGGCCGCTCCATCTCCCCAGGACTGCCACCCTGCTGGGAGACATCTCTTCAAAAGAATCCCAGGAATCTCTGGTGCCCCTGAGCCCCTCGGAGTCCTTTAGACCGACGAGCTCCCTGCTGAAGCTGGAAGGAGACGCATCCTGACACTGTTGCTGCTTCAGAGTCTGGTGATCGGACTTGTGCTTGGCTTGCCCGAGAAGACGCACAATAGCCGCCTCTGTCTGTGATCCTAGGCTGATTGCGGATGGACACAAGTATCACAGGGTGCCAGGTGTTCTCCTTAGGGTGTGTGGAAGAAGGTCTGAACTGTACTGTCTTGATCCTagctctttcttttctgtttttttttttttttttttttttttttt

Function

GO: NA

KEGG:

id description
ko03010 Ribosome
ko00970 Aminoacyl-tRNA biosynthesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006100 True 2384 mRNA 0.58 15 15080401 15088908

Neighbor

gene id symbol gene type direction distance location
AMCG00006098 NA coding downstream 2633 15074200 ~ 15077768 (-)
AMCG00006097 NA coding downstream 19640 15050921 ~ 15060761 (-)
AMCG00006095 NA coding downstream 35910 15042183 ~ 15044491 (-)
AMCG00006103 NA coding downstream 48598 15030987 ~ 15031803 (-)
AMCG00006096 NA coding downstream 88140 14981801 ~ 14992261 (-)
AMCG00006094 NA coding upstream 9423 15098331 ~ 15103532 (-)
AMCG00006099 kank3 coding upstream 15424 15104332 ~ 15123328 (-)
AMCG00006101 LOC106573875 coding upstream 72413 15161321 ~ 15181317 (-)
AMCG00006080 NA coding upstream 289314 15378222 ~ 15390581 (-)
AMCG00006081 gamt,LOC107747770,LOC107597217,LOC107685360,LOC107553529,LOC107757934 coding upstream 308344 15397252 ~ 15400964 (-)
G155899 NA non-coding downstream 98780 14980384 ~ 14981621 (-)
G155783 NA non-coding downstream 510565 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 588472 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 655655 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 710219 14369761 ~ 14370182 (-)
G155957 NA non-coding upstream 11401 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 90143 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 115961 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 118612 15207520 ~ 15318177 (-)
G156014 NA non-coding upstream 183905 15272813 ~ 15330546 (-)
AMCG00006102 slc5a5 other downstream 72422 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 296121 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 397421 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 570787 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 738798 14336891 ~ 14341603 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 344524 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 865168 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1365376 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1416456 16505364 ~ 16521689 (-)
G156341 NA other upstream 1562632 16651540 ~ 16680772 (-)

Expression


Co-expression Network