AMCG00006102 (slc5a5)


Basic Information

Item Value
gene id AMCG00006102
gene name slc5a5
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 14998500 ~ 15007979 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006102
ATGGATGACCTTGTGGACACGGGGCCTGCTAGGCCCGGTTTCGTCCTGGCCGATTACGCCGTCTTCGCATTCATGCTTCTGATCTCGGTGGCCATCGGGATGTTCCAAGCTCTCCGAAAGGGGAGTCCGCACCAGACCACGGATGACTTCTTCACGGGGGGGAGGCAGATGTCAGCGGTGCCAGTGGGGCTCTCTTTGTGTGCCAGTTTCATGTCAGCAGTCCAGGTTCTGGGGGTGCCCACCGAAGCCTACCGCTACGGCCTGAAGTTCCTGTACATGTGTCTGGGGCAGACGTTCAACTCCCTGATTACCGCCTTCCTCTTCCTTCCTGTCTTCTACCGGCTTGGCATCACCAGCACCAATCAGTATCTGAAGATGAGGTTTAACAGGACCATGCAGCTGCTGGGGAGCTTCCAGTTCATCGTAGCCACATTACTATACACTGGAATAGTAATCTATGCCCCCGCCCTGATTCTGAACCAAGCTACTGGGCTTAATATGTGGGCCTCTCTCTTCTCTACTGGGCTCATTTGCACGTTCTACACCACTGTGGGTGGGATGAAAGCAGTGATCTGGACAGATGTGTTTCAGATCATTGTCATGCTCTCAGGGTTTGTGGCCATTTTAATCCATGGCACCATTTTGGTTGGCGGACCAGCAAAGGTTCTTGAACTCGCCAGCAACGGGTCCCGGGTGAATTTTAACGACTTTAAACTGGACCCAAGGAAGCGCTACACTTTTTGGAGCTTCACTGTGGGAGGAACGATGGTTTGGCTCTCCATGTATGCAGCAAACCAGGCCCAGGTGCAACGCTACATCGCCTGCAAGTcagagagagaagcacagtGGGCTCTGCTTGTGAACCAGGTTGGACTGTATCTCATTGTGGGTAGTGCCGGAATCTGTGGCATAGTCATGTTCGCGCTGTACGGCCACTGCGATCCTCTCTTGGTGGGCCGGATCTCCTCCCCTGATCAGtATATGCCTCATTTGGTGCTGGATATCTTTAAAGACTACCCTGGCTTCCCTGGTCTTTTCCTCGCATCCGCATACAGTGGAACCCTAAGcACTGCTTCCACCAGCATCAACGCCATGGCAGCTGTTACCATGGAGGACTTGCTGAAGCCCCGCTTGGCCACCGTGTCCCAGAAGAGACTGATGCTCATTTCGAAAGGCCTGTCTCTGATGTTTGGGGTCGGCTGCATCACGGTGGCCGCCCTCTCCTCCCTCTTAGATTCGGGTGTTCTACAAGGATCATTCACCGTTATGGGGGTGGTGAGTGGCCCACTACTGGGGGCTTTTATCCTGGGTATGTTTATCCCCGCTACTAACACAACGGGTGTGTTTGCTGGTGTACTGGTAGGGTTTGGGATTTCACTGTGGATCGCAGTAGGATCAACGTTATACCCTCCTGGCCCCGACACAATGGGAGTGTTGCCCAGCTATATGGACCAATGCCCCCCACTGACGCCTGCCAAGCTTGCATTCAACCACAGTCTAATTCTGGGCAAACGAGCACACCGGCAGCCTGTCTCAGGGGCACAGAGACAGTCTGGTCTTGAAGACTTCTATGCCATGTCTTACCTGTACTATGGAGCCCTTGGGACAACTGCAGTGGTGGTGGTTGGAGTTCTGGTCAGCTATATATCAGGACCAACCAAGAGGATAACCATTGCACCGGGGCTTCTCTTTTGGGACCTACATAAAAAGCCCACTGAAATCTCTTCAGAGGATAAAGTGAATTCCCACTCTCTCATTGTACCTCTGGGGCTCACAAAGAGCAGAAGAGGAAGTGAGGGACATAAAACTGAAGTGAAGCTACAAGATGGACTTGGACAGAACAGAGAGGATGCCTTGCTTCCCGAGATCCAGGCCTAG
>TU196378
GGCATAGTCATGTTCGCGCTGTACGGCCACTGCGATCCTCTCTTGGTGGGCCGGATCTCCTCCCCTGATCAGtATATGCCTCATTTGGTGCTGGATATCTTTAAAGACTACCCTGGCTTCCCTGGTCTTTTCCTCGCATCCGCATACAGTGGAACCCTAAGcACTGCTTCCACCAGCATCAACGCCATGGCAGCTGTTACCATGGAGG

Function

symbol description
slc5a5 Enables sodium:iodide symporter activity. Predicted to be involved in iodide transmembrane transport and sodium ion transport. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in thyroid follicle and thyroid primordium. Human ortholog(s) of this gene implicated in congenital hypothyroidism and thyroid dyshormonogenesis 1. Orthologous to human SLC5A5 (solute carrier family 5 member 5).

NR:

description
solute carrier family 5 member 5, partial

GO: NA

KEGG:

id description
K14385 SLC5A5, NIS; solute carrier family 5 (sodium/iodide cotransporter), member 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006102 True 1878 mRNA 0.53 15 14998500 15007979
TU196378 False 208 lncRNA 0.54 3 15002410 15004191

Neighbor

gene id symbol gene type direction distance location
AMCG00006096 NA coding downstream 6239 14981801 ~ 14992261 (-)
AMCG00006033 LOC107589798,LOC107718068,LOC107722564,LOC107585128 coding downstream 67115 14920403 ~ 14931385 (-)
AMCG00006032 NA coding downstream 91342 14889140 ~ 14907158 (-)
AMCG00006044 NA coding downstream 122779 14866709 ~ 14875721 (-)
AMCG00006046 NA coding downstream 137765 14852157 ~ 14860735 (-)
AMCG00006103 NA coding upstream 23008 15030987 ~ 15031803 (-)
AMCG00006095 NA coding upstream 34204 15042183 ~ 15044491 (-)
AMCG00006097 NA coding upstream 42942 15050921 ~ 15060761 (-)
AMCG00006098 NA coding upstream 66221 15074200 ~ 15077768 (-)
AMCG00006100 NA coding upstream 72422 15080401 ~ 15088908 (-)
G155899 NA non-coding downstream 16879 14980384 ~ 14981621 (-)
G155783 NA non-coding downstream 428664 14569562 ~ 14569836 (-)
G155768 NA non-coding downstream 506571 14489290 ~ 14491929 (-)
G155754 NA non-coding downstream 573754 14422504 ~ 14424746 (-)
G155717 NA non-coding downstream 628318 14369761 ~ 14370182 (-)
G155957 NA non-coding upstream 92330 15100309 ~ 15105533 (-)
G155989 LOC105900582,LOC107680261,LOC107709904,LOC107550622,LOC107688471,LOC107585101 non-coding upstream 171072 15179051 ~ 15217634 (-)
G156002 NA non-coding upstream 196890 15204869 ~ 15212286 (-)
G156003 NA non-coding upstream 199541 15207520 ~ 15318177 (-)
G156014 NA non-coding upstream 264834 15272813 ~ 15330546 (-)
AMCG00006043 NA other downstream 214220 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 315520 14679797 ~ 14682980 (-)
G155770 LOC103376870 other downstream 488886 14509233 ~ 14509614 (-)
AMCG00006013 LOC105011475,LOC106613699,LOC106573549 other downstream 656897 14336891 ~ 14341603 (-)
AMCG00005997 rad23ab,LOC107704496,LOC107717165 other downstream 826893 14159131 ~ 14171607 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other upstream 425453 15433432 ~ 15491642 (-)
G156206 klhl26,LOC107680559,LOC107597147 other upstream 946097 15954076 ~ 15957090 (-)
AMCG00006083 NA other upstream 1446305 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 1497385 16505364 ~ 16521689 (-)
G156341 NA other upstream 1643561 16651540 ~ 16680772 (-)

Expression


Co-expression Network