AMCG00006108


Basic Information

Item Value
gene id AMCG00006108
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16155306 ~ 16180536 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006108
aaaaaaaaaaaaaaaattacccaTAATGCAAAAGAAGGTCGAAACGGAATGTTGTCATAgacgtaaaaaaaaaagaagaaaaaaaagacggAAGTTGTTCTCCATTAGACCACGCGACCGGAAGAGGCTGTAAGGCCCTGCTGTGGAAGTTACTGgcaaatgggaaaataaacacagccgTCAAGGGATCCTAAATGGGTGGTAACCTCTTGGAAGACAGCTTTTGGTGCCTGCTTTGCAGATGATCCTCATGAGGGGCAAAGATGGATGAACCATTATACATGTTCTGTAAATGGGAAGGAAGATTGTGGCCAGCAAAGCTTATAAGAAAAGCTGCCCAGCACTCCAAAAAGAAGAATGAGATAGAAGTGGAAATATTCAATGTGGGGAAGAGGATCTGGGTGAAGCAGGAGGAGACAGTGCCTCTAACGGAACAGAGGATTGAGATAATCTCTTTGCAACTAGACCTAGACTCCAAGAGGCAGCATATTGTACGGATATTTCTGGAGGATGATGACAGTGAGGAGGAGTTCCTGGGATTCCCCACAGACTGTAATCAGACGGCTCATGAGCCTGCAACACAAGAAATGGATTCTATTAAAGAACTGAGGTACCGGAAAGCACTACGTTTGGCGCTAAATGTGTTGTCTGGAGAAGTCGTACATTCCTCTTCACCTTCTGGTCCAGGGGCGGGGCGGAGGCAGTCTTGTCGGCTGAACCGAGCCCAGTCACGATCGCCACTCCAGTCCCCCCTGGGTGCGACAGCCCAGCCCAAGGCCAAGGATCAGCCACAGAAAGACACCTTTGTGAAGAAAACCGAGCCTCAACGTGTTCTCCGCAGTCAAACCGAATCAACAAGCAGAAGTGTTCCAAATCAGCCAGAGAAAGGTGACTTTTCCCATGGAGGGGTTCAACTGCGAGATGGCCACACAAAATCGACAGAGCCGCAGAAATCTAGCCTTAGGAGTCAAGTAGAGTCTCCAAAGTGCCAAAGTCCCCAGTCAGGAAGGCCCAGTGGTAAAAGGAAATCTTCGGGGAAGTGGTCTCCACTGTCAACAAGGGAAAATGGCtgtctgagaccaagtggaaaAACGGACTCCGCTGATGTGGAATATTCAACTGATGGGCCCAGGCCTAGGAAGAGGGGCAGGCCTCTGAAGGTCTCCACTGTGACAGAACTGGACGTGGAAAGGAACGTTGTAGACGAGAAGAGGCCTGCCAAAGCTAGACTAAAGTCGGCGTCTAACGACCCAAGCCCCCATAAAGAAACAGTTCAGAGGCAATTATCCCCAGAGACACTGAGCCCTCGTAGCCGAAAGGGAAGACCTTCCACACTGCAAAACGGGCAAACGTCACCTTGTGCTTCCTCTCCCTCTGACACTGATTGTAACAGTGGCCAAAGCAAGCGTGGCCGAGGGCGGCCACGCTTGCACAAACCTCTTCTCAGCTCCACACCCATCAGCAGCAGCAAACCGGAGCCACACACCAGGGACCCAAGACAGCCTCCAGAGATCTCCAGAGTGGGCACACCAAGGAGGGAGGAGGTCAAGAAAGTGCGCAGGCTTTTTGAGcacaacacagcaaaacaacagGATTCTGTGCCAGAGAAAGAGCAGGGCAGCAATAAAGCTGCTCGCAGAGGGAGGCATAAGAAAATACAGGCTGCTGCTTCCCCAGTGGAGCAGGAGATTGGCTCAGTCTCTCCCAGAACCTTGAAGCGCGGGCGCCCGAAAAAAAGCTGTCCAGAGCCCAACGGCCGCAAATATCCAGAACAATCAGCACCGCTAACTCAAGGGCCGGCTGACAGCCCACTGTCCACACGCGTGCATCCCAGACTGGAGCTACACGATGAAACAGAAGTGCTAGacgAACTCACCAAGTCTTCGGACTTGTCCATTGAGCTGAGCTTGCACAATGAAGCCAGCATCCCAAATATatcagaggaggaggaagaggatgacGACGAAGAAGAGCTTCCCAGTTTCTTTTTGCAGATGGAGAAGAAGCCCTTGTCCATCAGGGAGGGAATTTGTGTGTGGTGTAAGTTCCGGAGCTATCCGTATTGGCCGGCTATGGTGAAAAGTGTGAATCACAAGAATAAGAAGGCCAGCATTATCTTTATTGATGACCTGCTCTTCGATAAGAAAACTGTTCGAAAGGGATTTTGTGTATCCTTACGAACCCTGAAGCCTTTTGACTGTGAAGAGACTGATGAGTTTGTGATCAAAGCACAAGAAAAGTATAAAACTGCTATCAATTGGTGCTTGGAACTGATTCGTGACTACCGGATTCGGATTGCCTGTGGTTCCTTCTCTGGCTCTTTCATCGAATACTTTGCAAATGACATAAGCTGCCCGGTTCGGAAGATGTACCTGCAGGGCTCCACCAGTGTGCCGTTCCCCAGCAAGCTGATCAgggaagagcaggaggaggtGTCTGACACACAGGTGGATAGTTCCCCATCCTGCCATGGACGGTGCAAGAAGCTGCTACCCGATCGTTCCAAGGCAGCCCGCACACGGGCCAACGAGAAACTAGTTGAATTCATCATCAAGAACCGGGGAGCGGAGAGACACCTGCAGGTCGCGATCATCAGCGGCAGGACACCCTCGAAGTGGCTGAAGGAGTTCCTGAAGTTTAGCCGTTTTGTGACCTGTGTCGAGACCTACCTGGAGGACGAGGCCCAACTGGACCTGGTGTACAACTACCTGAAGTCCATCTATGACAGTGCCCCCCAGACGGCCCCCTGCCTGGCCGATGTGGACAGCATTCGCTTCATTCTGGACGTGCTGCTGCCAGAGGCCATCATTTGTGCCATTGCTACCGTGGACAAGATCTCGCTTGAAAAGGCTGAAGATAAGTACTTGAAGGGGCCTGTTTTAAGCAAAAGagagagagaagagttCGACATGCAAATTGAAAAGGAGATGAAGATGAAGGCCCTGTCCCTAAATATCCAGGGGACCCTATAGCTCCTCAAAGCCTGCTAGTGGAGTGACCTGGTCCTCTTCCTATAGAGGACCTCGGAACCTGGCAGCcctagtacaagaacaaacagaaCGACAGCGCATTTCGTCAGAGGGTTGAAAGGGCAATGTTGCCAAGTGCAAATGCCAGTGTGTCAGGTGACTTCCAAGTCAAAGAGCATCTGACTGGAGATGTCCCATCTGCACTGGTCTCAACAGAGATTAAcctaaaaatacatactttctTCAATCTAAACATTTCAGTGTGGTAAATTAAAGCCCAACCCAAATGAATTTAACATTGTAGAAAGCAACTGAAGTATGTGAAGATCAGAGCCCTATTAGCCCTATGAGCTTAAATAGGAATTGGGAGAACATCCTTagataatgtaaatattatcaATATTTCTTTTTGCAGAATGCCTTGTGTGATTATAACTTGACCTTTCTATTCTCAggaaatgttttactttgaaTGCTAGTAAGACGGTGGTGGAGGTCAGGGGGCAGTAATTGCAGCTACAGTCACTCTCGTAATGTTCTGAAGAGCAGTTTATATGACCGTACTCAATTTTCAAATTCTTTCAAACACTGTTAAACATCTGCAAGGCATGTTTACATTTCAGCATTATTCCAATCTGTATTATCTTGCTATTTATGTATACCAttggtaaaatgtaatttatgtatagTGTGTTTCAACACAGTCTAGGGAAGCAATTTGTCAAATGTCAGTTGCTGTTTTTTCGTTCCTGTACCTTTTAATGGATGTTATAGCTGAATCCCCTTGGTCCCAGTAGTCACTATGTAATAttgcttatatttatttatagcacTAATTTCACACACACTTAATTTTAAGGTTCAATTATTCTACAGTAAAATCCATTTCGATTCAAAACTACAGCATCTTGCCAAATGTGAAACCTGAGTCCACAATCTCAGTAGCATATATCTAACGAGAGtagagaaatataaaataagctgcttttaagttttttttttcctctgtgccAATCAGAAATTAATTCAGGGCATATTGTCAGTGGCTTGGATGCTAGTGCATTGAGCTGGCATATTATATAACCTGCAATGCCTTTATCTGAATCTAGCAACCAAGTTGGTACCTTTTTAGTTCCGTTCTATCAGTGATTTGAGTCACAGGGGAATCCAATAACCTGAAATGTTTCATACCTTACTCTGTTCGCCATGCCATccctatacatatatacattcatgtaaataaattacaagtgGCCTTATGTAGCCCAATATGTggcaaataaaaactgaatgtaTAATCGCTGTGTACCAAGTATGGAGAAGTGACTGTTTAATTATGGGAAAATCATGTTCATACAAACTATGTAGTTTAATTTTATACTGTCTCTTGTGTGAGTCTTGGagtaacaaatatatatatatattgtttctgtcATTTATAAGCATCAAATTTTGCATAATTATAGCACACTATTAAGGCAATTTCTGAAGCTCATTTCAACTGCTGATGGTAATGTAACCTGGAGTTGCCTTTTTAAATGCCAGATTGGATAAGTGCTTAGTCATCTGATATTTACATAGCTTCACTGGTATAAACAAATACCATTTTCTCCTTTTgagaacatgtattttttaattctaaattgTCAACCTGAATTTACCCAATGACATGCTAGAAAGAGTTTAGTTTCCTTGTCTATATGAACCTATGATTTAAGCCCGTCTAAATCTATCCTGGAATTACGCAAAACGTGTTGGAAAGCTCTTCCACAAAACATGCATATGATTGTGTACAAAGCTTATGAAGTTGTTTTTTGccatgtgcatttattttttaaatatgtaaaatataattgattttatttgtacttttgaacAAATCTCCTGCAAGTGAATGTTGCATTTCTGATCAGTAAggtgatgcattttatttgtaacttttttttaatctgtcctgtatctgaaaggaaataaatcaccTTTGCAAATTC

Function

GO: NA

KEGG:

id description
K23386 PWWP3, MUM1; PWWP domain-containing DNA repair factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006108 True 4960 mRNA 0.44 17 16155306 16180536

Neighbor

gene id symbol gene type direction distance location
AMCG00006115 NA coding downstream 79580 16073363 ~ 16075726 (-)
AMCG00006114 LOC107578059 coding downstream 124129 16024475 ~ 16031177 (-)
AMCG00006116 comp coding downstream 142962 16001553 ~ 16012344 (-)
AMCG00006087 NA coding downstream 277882 15840912 ~ 15877424 (-)
AMCG00006086 NA coding downstream 336450 15789347 ~ 15818856 (-)
AMCG00006109 LOC104962492 coding upstream 10094 16190630 ~ 16208678 (-)
AMCG00006110 LOC106574064,LOC106613575,LOC105011408 coding upstream 96550 16277086 ~ 16287328 (-)
AMCG00006084 ptbp1,LOC106613576 coding upstream 283476 16464012 ~ 16487227 (-)
AMCG00006119 NA coding upstream 318116 16498652 ~ 16500578 (-)
AMCG00006120 NA coding upstream 347686 16528222 ~ 16566157 (-)
G156228 NA non-coding downstream 83778 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 92234 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 155267 15994787 ~ 16000039 (-)
G156203 NA non-coding downstream 207779 15947208 ~ 15947527 (-)
G156113 NA non-coding downstream 539519 15615562 ~ 15615787 (-)
G156344 NA non-coding upstream 494262 16674798 ~ 16676047 (-)
G156378 NA non-coding upstream 684562 16865098 ~ 16922863 (-)
G156668 NA non-coding upstream 1951793 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 1957983 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 2253070 18433606 ~ 18434245 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 198216 15954076 ~ 15957090 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 663664 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 1147327 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 1371026 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 1472326 14679797 ~ 14682980 (-)
AMCG00006083 NA other upstream 273748 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 324828 16505364 ~ 16521689 (-)
G156341 NA other upstream 471004 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 767461 16947997 ~ 16963650 (-)
G156907 NA other upstream 3094664 19275200 ~ 19293820 (-)

Expression


Co-expression Network