XLOC_005986 (zgc:153981)


Basic Information

Item Value
gene id XLOC_005986
gene name zgc:153981
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 24834199 ~ 24837977 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00011823
CGCAGCTCTGAGATGCTCAGCGGTATCGGGTAACCGAGCAGCGTCATAAAGAGCACCTGTTTGTGTGGATCACGACGTGCCAAACGGGTTATGTATGCTGAGCCCCCGGGAAAACAGCAGAAACACATCTTCACTGGCATAATACTCGGATCTGGGTCAATTCGGCACAATGACAGCTCAGAAAAACAAGCACGGTCTCCTGCCTATTAAAGAGTTGGAGAATGTTCTGGACACATGTAAACTTGACCTAACTCCAGTCGACGAGGTCTGGCCAAACCTGTTCATCGGAAACGTGGCCATTGCTCAAAATAGAAATGCTTTGAAGAAAATGGGAATCACTCACGTTTTAAACGCTGCTCATTCCAAGCAAGGCAGCATCGGGGACCAGAGTTATTATGGCAATTCAATTGTATATTATGGCATCCCAGCAGAGGACTCTTCATCATTTGATCTTAGTGTGTACTTTAAAACAGCTTCTGATTTCATCCACAAAGCCTTGAGGAAGAAGAACGGAAAGGTGCTTGTTCACTGCATCATGGGAATGAGTCGATCTGCAACTCTGGTTCTAGCATACCTTATGCTGCGTCAGCGTCTTACCCTGCGCACTGCCATCCAAACAGTCGTACTGCGACGTGCCATCTATCCCAACAGGAACTTTTTGAGCCTTCTCCTGGATTTGGACATTCAGCTACAGAGAAAGCGAATGCTGTGCCCTATTctctgacagaaaaacacagatgcCATGAGCACACTAATGCCTGTGCATTCATTTTATATAACTAGAGGATGAAGAGTTAGCCATCGTTGGTATGTTTACATTATTTACGATAAGTGTACAGTATATAGCCTATATTGTTTCATAGTAAAACTGGTGCCTTTGGGGTTTAGTGTATGTTGCTGTATAGACCATCTTTGTACTTTTCCATAGATTTACAGGgttaattttaatatttgctATAATTTAGctataaaacactttttaatattGAATAAGTGGCTTTGCTTTTAACTGAAACAATATTTAACATTTGTCCTTCTTGCATTGccatttaaacagatttttcTGTACAATGTCTTGTAAATTtgagaatgatgatttttatgaATCTTTATATGATATATTCAAGATGCAGCTTTATGAACAGCACACAAGTGCCACATGATCctcacatttaaaatgacatttaactaTGGAGTCAGTATTCAGCACAGTGCACTAAATTAAGCAGTATTAAATGATTgaattgtggtttattattcagCTACAGAGAAAAGCCTGACTGTGAGCTGTATGAGCTTTTACGTTGCTTTTGGCAGCCAAAATTGGAGGAATCTATGGGCCAAGCACAACACTCTTCTGTTGACTCAATCCTAACAGCCTTGTTTAAATGACTGAGCAGCACTCGTTGATGTGTTTTTAGTGCACCTTTTTGTTTTAACAGTAGAATAATGTTTCATTCAGCTCATTGATTCACAGACGTTCCTTTGTTATCTTAGAGAACATTAATGGAGTGTAAACAGTTTTTCCAAAAGCGCTGTATAGTTACAACATTTAATTGCACATTTGACTCTTTCAGCTATGAGCAGGATGAATATTGAATTTGTTACACTGTTAGTTATGTCTGAATTTGTATGTATTTCTGAAGTATAACGACTGATATATGGATGTTTCATACAAACAAGGTGCCAAATAAAGTTAATATTCATCtgtgttcatttaaataaaataaatgtgataGTGCTTTGGGATAAGCATTTAA

Function

symbol description
zgc:153981 Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm.

GO:

id name namespace
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005575 cellular_component cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061103-367 Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm.

Ensembl:

ensembl_id ENSDARG00000069529

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00011823 True 1760 mRNA 0.39 3 24834199 24837977

Neighbor

gene id symbol gene type direction distance location
XLOC_005985 si:ch211-223p8.8 coding upstream 3482 24829996 ~ 24830717 (+)
XLOC_005984 AL929005.1 coding upstream 5330 24828753 ~ 24828869 (+)
XLOC_005983 col17a1b coding upstream 54507 24750078 ~ 24779692 (+)
XLOC_005982 cfap43 coding upstream 91048 24717880 ~ 24743151 (+)
XLOC_005981 zgc:66426 coding upstream 146077 24679674 ~ 24688122 (+)
XLOC_005987 dusp13a coding downstream 4880 24842857 ~ 24850812 (+)
XLOC_005988 si:dkey-24f15.2 coding downstream 13125 24851102 ~ 24854662 (+)
XLOC_005989 ap3m1 coding downstream 361872 25199849 ~ 25209083 (+)
XLOC_005990 chuk coding downstream 448561 25286538 ~ 25379820 (+)
XLOC_005991 gsto1 coding downstream 542455 25380432 ~ 25389051 (+)
XLOC_005978 NA non-coding upstream 184260 24597665 ~ 24649939 (+)
XLOC_005975 NA non-coding upstream 261271 24570620 ~ 24572928 (+)
XLOC_005962 CR352246.1 non-coding upstream 1012899 23821186 ~ 23821300 (+)
XLOC_005959 NA non-coding upstream 1423689 23388493 ~ 23410510 (+)
XLOC_005997 BX530079.1 non-coding downstream 606007 25443984 ~ 25444523 (+)
XLOC_006005 NA non-coding downstream 932022 25769999 ~ 25782811 (+)
XLOC_006007 NA non-coding downstream 1106302 25944279 ~ 25961369 (+)
XLOC_006008 NA non-coding downstream 1127750 25965727 ~ 25983365 (+)
XLOC_006009 NA non-coding downstream 1218480 26056457 ~ 26065264 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000012_12434858_12435727 NA coding CI01000012 null 12433898 ~ 12436235 (-)
tiger barb (Puntius tetrazona) zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 misc NC_056711.1 CM032080.1 9161517 ~ 9164114 (+)