AMCG00006113 (slc35e1,LOC106573890)


Basic Information

Item Value
gene id AMCG00006113
gene name slc35e1,LOC106573890
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16054035 ~ 16066898 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006113
ATGGCTGCGGTGGCTCGTCCACAAGTGAAGGAAGGAGTCCGGATTGCGCTGCTGTGCCTCTGCTGGTACTCCGTCAGCTCGGGGGGCAACGTCATCAATAAAATCATCCTGAATGGATTTCCCTACCCGGTCACCGTGTCGCTCTTCCACATTTTCTCCATCGTCATCTTCCTGCCGCCGCTCTTGCGGGCATGGGGAGTCCCTAAAACTGAATTACCCGGCAGATATTACCGCTGGTTCATCCTGCCTTTGGCTTTCGGGAAATACTTCGCATCAGTATCGGCTCACTTCAGTATCTGGAAGGTCCCGGTCTCCTATGCGCATACAGTCAAAGCCACCATGCCAATCTGGGTGGTGTTGTTGTCTCGCATCATCATGAAGGAGAAACAGACGACAAAGgtTTACACGTCTCTGGTCCCTATAATCGGAGGTGTGCTGCTAGCCACGGTGACAGAGCTGTCGTTTGACCTCTCTGGACTGATTAGTGCCCTGGCTGCAACCCTCTGCTTTTCTCTGCAGAACATCTTCTCCAAAAAGGGCGGAGTCAACGACTGGTCCTGGACGCTGATGTTGCTGTTGATCAGCGGTTTCTGTAACTTCGCCCAGAATGTCATCGCCTTCAGCGTGTTGAATCTGGTCAGTCCCCTGAGCTACGCGGTGGCCAACGCGACCAAGAGGATCATGGTAATCAGTGTGTCCCTTTTGATGCTGAGGAACCCCGTCACCTCCACCAACATGCTGGGGATGCTGACTGCCATTCTGGGGGTCTTCCTCTACAACAAGGCTAAATACGATGCCAACCAGGAAGCCAAGAAGAAGTTGTTGCCAGTTTCCAAGCAGGACCTGGTCTCTTTCGATCACGGAAATGTGTCGTTGGAGAAAATGCAACCCAACGGAACGGGGCCTTTCCCCCAGAGCTCAGACTTTCAGTACGGCAGGAGTAACGTGCTGACTGATCACTTCCAGTACAGCAGACAGACCTACACGATGGGTTACGGCTCCAACCAGTATGACGTGTAG
>TU196781
CCCCGTCTCTGCTGCCGGTGCTGTGACTCTGAATTGGAAGATGGCTGCGGTGGCTCGTCCACAAGTGAAGGAAGGAGTCCGGATTGCGCTGCTGTGCCTCTGCTGGTACTCCGTCAGCTCGGGGGGCAACGTCATCAATAAAATCATCCTGAATGGATTTCCCTACCCGGTCACCGTGTCGCTCTTCCACATTTTCTCCATCGTCATCTTCCTGCCGCCGCTCTTGCGGGCATGGGGAGTCCCTAAAACTGAATTACCCGGCAGATATTACCGCTGGTTCATCCTGCCTTTGGCTTTCGGGAAATACTTCGCATCAGTATCGGCTCACTTCAGTATCTGGAAGGTCCCGGTCTCCTATGCGCATACAGTCAAAGCCACCATGCCAATCTGGGTGGTGTTGTTGTCTCGCATCATCATGAAGGAGAAACAGACGACAAAGgtTTACACGTCTCTGGTCCCTATAATCGGAGGTGTGCTGCTAGCCACGGTGACAGAGCTGTCGTTTGACCTCTCTGGACTGATTAGTGCCCTGGCTGCAACCCTCTGCTTTTCTCTGCAGAACATCTTCTCCAAAAAGGT

Function

symbol description
slc35e1 Predicted to enable antiporter activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E1 (solute carrier family 35 member E1).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15283 SLC35E1; solute carrier family 35, member E1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006113 True 1020 mRNA 0.53 5 16054075 16066898
TU196781 False 579 TUCP 0.53 3 16054035 16059830

Neighbor

gene id symbol gene type direction distance location
AMCG00006112 NA coding upstream 4211 16047776 ~ 16049824 (+)
AMCG00006104 klhl26,LOC106613638,LOC106573902 coding upstream 96935 15947208 ~ 15957100 (+)
AMCG00006105 NA coding upstream 127475 15924629 ~ 15926560 (+)
AMCG00006106 NA coding upstream 135444 15906189 ~ 15918591 (+)
AMCG00006074 rab3a,rab3ab,LOC105900867,LOC107553558,LOC107680521 coding upstream 287395 15753228 ~ 15766640 (+)
AMCG00006088 NA coding downstream 37483 16104381 ~ 16120903 (+)
AMCG00006141 NA coding downstream 607888 16674786 ~ 16680552 (+)
AMCG00006148 NA coding downstream 624683 16691581 ~ 16696873 (+)
AMCG00006142 tmem259 coding downstream 640710 16707608 ~ 16722360 (+)
AMCG00006143 NA coding downstream 656394 16723292 ~ 16731231 (+)
G156155 NA non-coding upstream 220741 15833079 ~ 15833294 (+)
G156130 NA non-coding upstream 241924 15778199 ~ 15812111 (+)
G156082 NA non-coding upstream 448156 15561603 ~ 15605879 (+)
G156042 NA non-coding upstream 622096 15430476 ~ 15431939 (+)
G155974 NA non-coding upstream 866810 15185874 ~ 15187225 (+)
G156279 NA non-coding downstream 397110 16464008 ~ 16467676 (+)
G156302 NA non-coding downstream 437872 16504770 ~ 16505206 (+)
G156321 NA non-coding downstream 532634 16599532 ~ 16599858 (+)
G156326 NA non-coding downstream 558660 16625558 ~ 16627713 (+)
G156329 NA non-coding downstream 577549 16644447 ~ 16644849 (+)
AMCG00006111 smim7,LOC106573893 other upstream 18066 16032892 ~ 16035969 (+)
AMCG00006107 LOC107709901,LOC107680255 other upstream 65260 15964433 ~ 15988775 (+)
AMCG00006065 lsm4,LOC106613629 other upstream 469274 15578084 ~ 15584761 (+)
G155932 NA other upstream 946301 15107209 ~ 15107734 (+)
AMCG00006092 rps28 other upstream 948468 15103456 ~ 15105567 (+)
AMCG00006089 NA other downstream 56230 16123128 ~ 16145238 (+)
G156327 NA other downstream 560895 16627793 ~ 16629182 (+)
AMCG00006149 NA other downstream 1056307 17123205 ~ 17127633 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 1595292 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 1679235 17746133 ~ 17764228 (+)

Expression


Co-expression Network