AMCG00006114 (LOC107578059)


Basic Information

Item Value
gene id AMCG00006114
gene name LOC107578059
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16024475 ~ 16031177 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006114
ATCTGGAGCTGCCAAGTAACACTTGATGCCGTCTGACAGCACAATTTATACAGCCGTGCAAAAAGCTATATTAATAGGGAGGCTCGGGTGAAATACTTTTTACTCGTGGAGACAGGGGTCTACGCAGTGGGTCCAGGACTGGGGGGTAGAGGACATTTtagaagacagaaaacaggactGGAAGACAGCTGCTCTGATCCACACGCATATTGAGATTTGTCTATTTGTGCACCATGGAAGTCCTAGCTGCTCTCAACCTGGGCGAAATAACCCAGTACTTTGCCAAAATGTCTATGTTTCCCATTTTTGATCTTGCCTATTACATCGTCTCCATACTGTACCTCAAGTATGAACCAGGCTCTGTGGAGGTGTCTCGCAGGAGTCCTGTGGCCTCCTGGCTCTGTGCCATGCTCTACTGCTTCGGGAGTTACATCCTAGCCGACATCATGCTCGGAGACTCCCCCATCGACTACTTCATCAAGCTTGTGCTGGTGGCCTTGAAGGAAGTGGTCAGAGTTCGTTCTGGTGTGGCTCTCATGTCCAACTTCGAGCAGCTGATCCGCGGAGTGTGGAGACCTGAGACCAATGAGATTGCCCATATGACATTCCCCACCAAAGCCAGCCTGTATGGAGCTATCCTGTTCACCCTCCAGGAGGCCCACTGGCTTCCAGTCTCAAAGAGCACCCTCATCTGTCTCTTCACCCTCTTCATGGCCACTGCGAAGGTGTTCATGACCGCCACCCACTCGCATGGTTCTCCATTCGCCCTGGTGGAATCGATGgtctgctctgtgctgttcGGCTCCCCAGCCGGAGGCGCGGACCACCACGACAGCCATGAATCCAGCCACCACCCCGCCCCTGCTGCTGCAGTCGCCCCGATGTCTCCTGCCAAGACCAAGGAGGAGCTCAACGAGGGAACCCGCAAGAGGAAGGCCAAAAAGGCAGAGTAGAGTCCTAGCATGGCGCAACAGAACCAGCCAACACAACAACCAAGATAGCGATGACAATAAcgacaacagcagcaacaactaTTGCCCTCCCAAGATATGCTGGCGGTGATCTCCCATGAACTGGGCTTCATGTTTCAAGAGTGTAATGGACTGTATCATTATGCCCTGTGTGGTAGGAGAGGGGGGTGGAGCTTTAGACGGTGTGATGACTCCTACATTTCCAGTTGTCGTAGTTGTAAACAGAAAGGGTCATAGTTTATTGTAAATAGGAAACAAAATTGAACAAATGGGGTCATACACTTCagacattttttcccccctgtgaTATCATTTATCAACTCCACCCCTCTTTTTGTCCCAAGATGGACTTGTCTGCCTGCAAGTGTTAAGACAAAACATTGTGGGTATTGCATGGTGCCACCCTATCTTGGGAGAGTAATACCTAGGTTTATTCCTCCTCGCATAAGAGACTAGAAAAGTCTTTTTTGGTTGCATTGCCATTGGAAGACAGGATCTTTGGACACAGTTGAAGGATCACTCACCTGGGCAGTACCACATGACTACTGAGACACTTGTCAGttactttgcatttattattattgctacaTATTTGATTTCCTCCTTTTCGAACCATTAAAACACATCCCAATTCCAGGTCCCAGTCCAAATTGGGCTTAACTGTGAacatgcaaagaaaaaacaaaaagcaggacTGGATTGTCTTGATTTCTTGTAAATGGATTCTTTTTCAATCCAATTCAGCCcctaaataaaactaacaaacatttttccaa

Function

NR:

description
PREDICTED: trimeric intracellular cation channel type A-like, partial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0012505 endomembrane system cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
K24013 TMEM38, TRIC; trimeric intracellular cation channel

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006114 True 1747 mRNA 0.48 6 16024475 16031177

Neighbor

gene id symbol gene type direction distance location
AMCG00006116 comp coding downstream 12131 16001553 ~ 16012344 (-)
AMCG00006087 NA coding downstream 147051 15840912 ~ 15877424 (-)
AMCG00006086 NA coding downstream 205619 15789347 ~ 15818856 (-)
AMCG00006085 NA coding downstream 240474 15778207 ~ 15784001 (-)
AMCG00006075 NA coding downstream 247967 15773678 ~ 15776508 (-)
AMCG00006115 NA coding upstream 42186 16073363 ~ 16075726 (-)
AMCG00006108 NA coding upstream 124129 16155306 ~ 16180536 (-)
AMCG00006109 LOC104962492 coding upstream 159453 16190630 ~ 16208678 (-)
AMCG00006110 LOC106574064,LOC106613575,LOC105011408 coding upstream 245909 16277086 ~ 16287328 (-)
AMCG00006084 ptbp1,LOC106613576 coding upstream 432835 16464012 ~ 16487227 (-)
G156207 NA non-coding downstream 24436 15994787 ~ 16000039 (-)
G156203 NA non-coding downstream 76948 15947208 ~ 15947527 (-)
G156113 NA non-coding downstream 408688 15615562 ~ 15615787 (-)
G156104 NA non-coding downstream 439709 15581857 ~ 15584766 (-)
G156049 NA non-coding downstream 592545 15427308 ~ 15431930 (-)
G156225 NA non-coding upstream 31556 16062733 ~ 16063072 (-)
G156228 NA non-coding upstream 35492 16066669 ~ 16071528 (-)
G156344 NA non-coding upstream 643621 16674798 ~ 16676047 (-)
G156378 NA non-coding upstream 833921 16865098 ~ 16922863 (-)
G156668 NA non-coding upstream 2101152 18132329 ~ 18137505 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 67385 15954076 ~ 15957090 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 532833 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 1016496 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 1240195 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 1341495 14679797 ~ 14682980 (-)
AMCG00006083 NA other upstream 423107 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 474187 16505364 ~ 16521689 (-)
G156341 NA other upstream 620363 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 916820 16947997 ~ 16963650 (-)
G156907 NA other upstream 3244023 19275200 ~ 19293820 (-)

Expression


Co-expression Network