AMCG00006116 (comp)


Basic Information

Item Value
gene id AMCG00006116
gene name comp
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16001553 ~ 16012344 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006116
ATGTTCTTGGACCTAGATTATCAGTCAATCCAACCCAATGTACAATCATCTCCTCTAGGTATGCGTGGAGACAGACCGGATCCCTCATGGCCCGTCCCGTCCTGCCTTCCTAATCCCTGTTATCCTGGGGTGAAATGCACTGAGACAGCTGGGGGTATAAAATGTGGTTTGTGTCCCAACGGTTTGTTTGGAAACGGGACTCACTGTACTGATGTGGACGAGTGTGTTGTGGATCCCTGCAATCCTGGTGTTCACTGTATAAACACCTCCCCAGGCTTTCGCTGTGGACCCTGCCCTACTGGATACACAGGCCCAGCTGTTCATGGTGTAGGCCTTTCCTATGCAACAGCCAACAAACAGGTCTGCAGAGATGTCAATGAATGTGAGAGCTCAAACAACGGAGGCTGCGTGGCaaactccatttgcagcaacACACCGGGGTCATTCCGGTGCGGTCCCTGCAAACCAGGATTTACCGGTGACCAGAGACGAGGCTGCCAGGCAGAGAGAGCTTGTGGTGACAGACAGTCGAACCCTTGTCACGAAAACGCAGAGTGTATTACTCACAGGGATGGGACTATTGCTTGTTCTGTAAGATCACAAAATGGCTCAGATTTAATTGGGTCTGCTGTAACCACGCCCACCCTctttaattgtacatttcagCCAATGGGAAGTGTGTGTGCAGTCGGATGGGCAGGAAATGGTTACATCTGTGGGcctgatattgatattgatggCTTCCCCGATGAGAAACTGCAGTGCCCAGAAAGAACCTGTCAACAGGACAACTGTGTGACTGTGCCCAATTCCGGCCAGGAGGACGCAGACAGCGATGGAATCGGAGACGCCTGTGACGAGGATGCGGATGGTGACGGGATCTTTAACACCGAGGATAACTGTGTGCTGGTGCCCAATGTGAACCAGAGGAACGTCGATCAAGATGATTTTGGTGACTCGTGCGACAACTGCCGTCTCATCACCAACAACGACCAGAGGGACACCGACGGGGATGGGAAAGGAGATGCCTGTGATGACGACATCGACGGGGACGGAATACGCAACATCCTGGACAACTGTGAGAAGGTGCCCAACATGGACCAAAGAGACAGGGACGGAGATAATGTTGGAGATGCCTGTGACAGCTGCCCCAATGTCAGGAATCCAGATCAGCTGGACATTGACAACGACTTGATAGGAGACCCTTGTGACACCAACAAAGACAGCGACGGAGATGGGCACCAGGACTCTCGGGATAACTGCCCCGCCATCATCAACAGCTCCCAGCTGGACACGGACCACGACGGGCTTGGAGACGAAtgcgatgatgatgatgacaacgATGGCATTCCCGATCTCCTTCCCCCAGGGCCTGACAACTGCCGTCTCATTCCCAACCCCCTCCAGGAGGACTCTGATGGAGACGGCATTGGGAACATCTGCGAGCATGACTTTGACAACGACACAGTGATCGACACCATCGACGTATGCCCGGAGAACGCAGAGGTCACGCTGACTGATTTCCGTGCCTACCAGACCGTTGTGCTTGACCCAGAAGGAGATGCTCAGATCGACCCAAACTGGGTGGTCCTCAATCAGGGGAGAGAGATTGTGCAGACTATGAATAGTGACCCTGGATTGGCTGTTGGTTATACAGCATTCAATGGCGTGGATTTCGAAGGAACGTTTCACGTGAATACTGCCACGGACGATGACTATGCCGGATTCATATTCGGGTACCAGGACAGTTCCAGCTTTTACGTGGTGATGTGGAAACAGGTGGAACAGATTTACTGGCAGGCCAACCCTTTCCGAGCTGTGGCTGAGCCCGGAATTCAACTAAAGGCTGTGAAATCAAACACGGGCCCCGGGGAGAACCTGCGTAATGCACTGTGGCACACGGGGCACACGCCCGACCAAGTGAAGCTGCTTTGGAAAGACGCACGCAATGTGGGCTGGAAGGACAAGACCTCCTACCGCTGGTTCCTGCAGCACCGGCCACAAGAGGGCTACATCAGGGTGCGCTTTTATGAAGGCCCACGGATGGTGGCTGACACAGGGATCATCATCGACACCACCATGAGAGGTGGCCGGCTTGGGGTCTTCTGCTTCTCCCAGGAGAACATCATCTGGGCAAACCTGCGCTATCGCTGCAATGATACCCTCCCCGGAGACTTTGACACATACAGGGCTCAGCAGATTAAGCTTTAA

Function

symbol description
comp Predicted to enable calcium ion binding activity. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Is expressed in several structures, including head mesenchyme; heart primordium; mesoderm; pectoral fin; and somite. Human ortholog(s) of this gene implicated in carpal tunnel syndrome; multiple epiphyseal dysplasia 1; osteochondrodysplasia; and pseudoachondroplasia. Orthologous to human COMP (cartilage oligomeric matrix protein).

NR:

description
PREDICTED: cartilage oligomeric matrix protein

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006116 True 2211 mRNA 0.53 16 16001553 16012344

Neighbor

gene id symbol gene type direction distance location
AMCG00006087 NA coding downstream 124129 15840912 ~ 15877424 (-)
AMCG00006086 NA coding downstream 182697 15789347 ~ 15818856 (-)
AMCG00006085 NA coding downstream 217552 15778207 ~ 15784001 (-)
AMCG00006075 NA coding downstream 225045 15773678 ~ 15776508 (-)
AMCG00006069 pgpep1,LOC103360783,LOC104958139 coding downstream 426866 15565462 ~ 15574687 (-)
AMCG00006114 LOC107578059 coding upstream 12131 16024475 ~ 16031177 (-)
AMCG00006115 NA coding upstream 61019 16073363 ~ 16075726 (-)
AMCG00006108 NA coding upstream 142962 16155306 ~ 16180536 (-)
AMCG00006109 LOC104962492 coding upstream 178286 16190630 ~ 16208678 (-)
AMCG00006110 LOC106574064,LOC106613575,LOC105011408 coding upstream 264742 16277086 ~ 16287328 (-)
G156207 NA non-coding downstream 1514 15994787 ~ 16000039 (-)
G156203 NA non-coding downstream 54026 15947208 ~ 15947527 (-)
G156113 NA non-coding downstream 385766 15615562 ~ 15615787 (-)
G156104 NA non-coding downstream 416787 15581857 ~ 15584766 (-)
G156049 NA non-coding downstream 569623 15427308 ~ 15431930 (-)
G156225 NA non-coding upstream 50389 16062733 ~ 16063072 (-)
G156228 NA non-coding upstream 54325 16066669 ~ 16071528 (-)
G156344 NA non-coding upstream 662454 16674798 ~ 16676047 (-)
G156378 NA non-coding upstream 852754 16865098 ~ 16922863 (-)
G156668 NA non-coding upstream 2119985 18132329 ~ 18137505 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 44463 15954076 ~ 15957090 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 509911 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 993574 14998500 ~ 15007979 (-)
AMCG00006043 NA other downstream 1217273 14782506 ~ 14784280 (-)
AMCG00006037 rpl36,LOC106560598,LOC107678109,LOC107741803,LOC107744644,LOC107577535 other downstream 1318573 14679797 ~ 14682980 (-)
AMCG00006083 NA other upstream 441940 16454284 ~ 16462165 (-)
AMCG00006118 NA other upstream 493020 16505364 ~ 16521689 (-)
G156341 NA other upstream 639196 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 935653 16947997 ~ 16963650 (-)
G156907 NA other upstream 3262856 19275200 ~ 19293820 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003898 comp coding NC_007122.7 CM002895.2 6941389 ~ 6974022 (-)
grasscarp (Ctenopharyngodon idella) CI01000057_04512368_04525620 COMP coding CI01000057 null 4511877 ~ 4525620 (-)