AMCG00006120


Basic Information

Item Value
gene id AMCG00006120
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16528222 ~ 16566157 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006120
ATGTCTGAGGCGTTGACACAGCAGGAGAGACTCCAAGCTATAGCGGAGAAAAGGAAGAGGCAGACAGAGATTGAGAACAAAAGGAGGCAGCTTGAGGATGACCGCAGACAGCTCCAGCACCTCAAGTCAAAGGCTCTGAGGGAGCGATGGCTGTTGGATGGTGCACCCTCTGCTGGCTCTGAGGAGGATGAAGCCAAGAAGCAACTTACTGAGGACGAGGCCAAGACCAAGGGCCTGGAGGAGGCCATTCTGAGactggagcaggagctggaggagtTGGAGACAGGCGTGTCTGCAACTTCGACCAAAGAGAACCTATCGGAGGCCGCCAAAGAAGAGGAGGGGAAGGCCGGAGACAACCCAGAGAAGGCTCCCTCAGGCTCTGCGAAAGAGGTCAAAGTTCACAACAGCCCTCGTCTGGACAAGTCCGGAGGTGCCTCAGGTATGATGAAAGCAGCCATGTACTCAGTAGAGATCACCATCGAAAAGGACAGACTCACAGGGGAGACAAAAGTGCTGTCTACCAACACCCTGCTGCCCAAAGACCTCTCGCACCAAGGGGTCAAAGTCTATGAGGATGACCAGAAAGTGGTTCACGAGGTGCGTGGGGTGGATGGAGCCTTGGAGAACGGGGTTCATCTTCTGAGCTCTTCAGAAGTGGACGAGCTCATTCACAAGGCTGACGAGGCCTCCATGGGCGAGGGAACCCCTAAGACAGGGAAACCTGCCGAGGCCCAAGAGCAGACCCCCAAGAAGGAGATCACTGGCATGGAAGCCAAGCCCACTGACAGCCCCCAGACAGCGGAGGGAGAAGCCACAGAGGATCGCCCCGTTACCATGGTCTTCATGGGTTACCAGAACGTGGAAGATGTGAGTGAGACCAAGAAGGTGCTGGGTCTGGAGGGCACAGTGAAGGCCGAGCTGGTGGTCATTGAGGATGGGGAGAGCAAAGGAGGCGCCGACGGGGCCAAGCAGGAGCAGGCGCCCCCCAACGGGAGTGCGGCGGATCCCTTGAAAAGCCAGGAGGGTGGGGAGAAGGCAGCCGAGGCTGAAGCCGGAGCAGGAGACGTCAACACAAAGGAGAAACAGCCCTGCAAGTGCTGCTCAGTCATGTGAGCCTAGCCCTCAAACGAGGACTTGACTTTTcgagtaaaaaacaaacaaaaaaaaacaaaaaaatacattctgttcTGTACCTTTTGAGCGACTGTTTTTCCccaatgtttttagtttttgttttgttttttgtttttatcacattttgttattttaaatagttttatttttggggggtggggggcatttGCATCTTTACGATTAGTACTAAAACAAACTGTCAAAGTCAATCAGTTGGTTCAGCACTGAGTTATCTGGGGTTGATTTCTCCAAAATAGGGGGAAGGAGGTGGAATTATCCCCTATCCGTCTTGTGCTGAAGTTATTCAGTGTCATCCTGAATGCATAAATCTATCAAACTAAACACAACATCTCATATACACTGTCATTGATTTTGTAGTCTTACATTTCCCGTATGAAGGACACAGATGCGTATATCaatctatatattaaaataataaaaataagaaacatttattttttaaatatatttattaggcttttttttaagctttacaTATTCGTCACTGCAAATACAGATGCATCTGATTAACTCTGTGTTATGCCAATATTTTTGGTTTGAAGTAAAaagacatgatttaaaaaaaaataagacaaccttaataaggaaaatatcttttaaaatatgaaaaatatgaagaaagtAACATGAGAATCTTTTTCTATTGATTTCAAGAATgcttgaaagaaagaaaagcataatgCCAAAATTGACCAATTATCAGTATAGGAGTGAGGTTGCAAACAAAGTGCcagttatacatttgtataataatattaaaacagctCGCGATgtaaaaaagcaattttcatcttgaaaaaactaaatggcaAAGGCacttgaattattaaaataaatcccctCGAACAAAGTCAGAATGGAAATAGACCTAAAAGGTTACAATATTTAACTACCTGACTacttcaaaataacatttattttccattgtttatgtttttatttatttgtttactgttGAAACATCAATATTGTTTATTCGCTGTGCCATCAAGTGTCTAGATCGGAATTAAaccaacatgttttttgttttttgtttttctttctgggaATTGATATGTACTCTCCCATTatcacattaatattaattatactgCTACTTTTAATCATTTGAATGAATTCAGATACCTCTGTCTCTCATACCGGAGTTTGAGGCTCATTAAATAAATGCCATTGTGTAAACAGCCAAGTTTGCCTGATTCATTTTATGAGGCTTTATCCCTGGAAGAAAAACTAAGCCTTGGATAAATGGATGTTGGCTGgtgccattttaaaaacaaggaccacagcaatttgtatttattccagtGATGCAAACACCTACTTAGACAGAGCAATGGTTAATGTTTTTgatccaaaaaagaaaataaaaataggtttattttttcttattttgggtatacttctaaaaatgtatttttattttttgtaatctttATGTAAATTGCCCTTTGAAGTCTGAAAGCATATTTTGATGTTTATAACGGTGCTGTCCAGATCGTATTACTAATGTCTTGCTGTTTGGCTTCATTCTAGATTCtcgatttttttgtttatgtgtctgttttgttttttttttaacatggtgATTTTCAGTTTGAGAGTGATCCTTAGTATTCACAATCCTTTGGGAGATTAATGATCAGAACAATGTTGTCTTTCACTTCTTGACCTGCCGAAACCTAGTTCACCAtttctgcacacacagacacggtttcaaaaacacagcaaatgaCACAGCAGGTGTTTATGAATACAGATAATATTGGTCTGCATCCTGGtggtttttaatgtgtgtaaagGTGTAAAGCTAGAGCGAAACTCGGGAGCATCCTGACATTCAAGGAATTTATGAGAAATTATTTTTCCCATGATACTCCTTTTATTcttagcttttttttccccccaaatacACTGCTAATGCTTTGAAGCTAACATTAaacaactgtttttttattttattttctgttgttctgtttttgtttctcctttatttccttttagatttgtttatttctttgtttgtttttggagcACATTTACATATCAGCAAATAGGAAACGTGGAAGTGAGCGCTAATGAAGTGAAGCCACACGAACACCAAGcccatttaaatagttttccttttaaGAGTTGTTACGATCCTACGCTGAAAGCTTATGTGCAACTTATCTAGGAATAAATTGAAtctgtttttcaaaattaactgAATATGGCATTAGGCTGGACTCACTAAAGTCATTTGTGgtgaatctgtttttatttcaaagtctGACAGGCAGTGACCGTGAGCCTGTCTATAGTTCTTCTGAAATGTTGTAACAGACTCTATGCAAGTATTCAGGTATAAAACAACCACCACCCCCTATCCACCTCTATGCAGAACTGGACCACTTTCTGCaacttgtttttctgtcacCCTGCACAACCGCAACCCTGTGAACAACTGTGAAGTCTGCTCCTTTTGTTGTGTACTTCTTCAATCACAACAAAGCATGCTGTATCTGAAACAGCCGTCAACTgggtcctgctgttttttttttgagttGTGTTCGTGTACAGTGTCTTACCAATAGAGCAGTTTGTGCATTTTACTCCCAGGCAAAGGACTGTAcggtgtgtttgtttcctcttGAGACCTTACAGTTACATTAGTGAAATGATCCCACAGAGCAAGGGACATTTTTCTGAAGGGGTTGTCGGCTTCATCTTAAACGTTGGCAggttttacaatttaattaaatttttaatGTAAGTGTCATCTGTTGGGGGTATGCATCCAATGGTTTGTCACGATAAGTAAAATTAagtttgaaggaaaaaaagtataaatgcatttaacatcTTGGCTTTTCAGTGTGGGGTAGTCCTGTTCCCCATGGATTCTAGCTCCCATTGAATACCTGTTTAAAATCTGGAGGTTTAAGTCATAAACCAGCAGAAGTAACTATGATCTGGGCTCCATTTATTGTCAAACTAATTCCCCACACTGCTCCAACAAAAGTtgtgcagaaacaaaatacttttttcactgagtgggaaaattaaagcaaacaaaacagaaggcAACTTTGAATGACATCAAAGGTTTTACAGGCAGTGACCCAAACTAACCTTTGTTTTTGAAGATGTCTATTATGTGTGTGGGGCCTTTTCAGGTCTTATTTTAATGGTGGTCAAATATTGGCCTACACAATTATTTCCAATGTTGGCAACTCATATAAACATCCCTTTAAACAGGGTCTGTAATTGAATGAATGGTCTGTTAATCAAATGGTGAACAACCTTTTTGTCAATTGTGACTTCCTGTCCAGGCAAAACAAAGCTGTGCAGACCCAGGACTTCTTAAAAAACACTCACTCAATTCTTCTGAGTCCCAtccaaaccccccccccaacacccacTGCCTTGTGAggttttgtaaaatgaattgCTTGGGGATAATTCATGACTTCAGCTACAGAACAGTTGTCATTTGTACAAAATTCTCTCCCTGGGTAGTAGGTGGCAGATACTTCGGATGTTGTGAATTAAAAGtagattaaaatgtcattagGACCCACTAAACACAGTCTAAAACAGAGGTGAATTGTGAAGAATGCCTTTTCAATTATACTTGCTTGTTTGGGTTTCcgtttctttccttccttcttctTTGCAAGGTGCTAACTGACACAGGATAGCTGCTGTGATTCAGTGCAAAGTGCCAAATCACACTTGCACAGTCCCGTTGTGGCTTCTCCCAGAAACATCAATGTGCATAACTGGACAACCATGCTCTTCTTGTTCATTAAAACCAGACAGAAGCCATTTTTGTTGTCGGAAGCTTTAACAAGCAAATCTGATTCAGCTTTGGTGGCATTACACTAGAATTAAATCATGTCTTAACATCAGATTACACTGCTTTTAATTTGGAGTTCCTTCTAAACTAAGGATTATATgtgaggaaaaaactaaatctataGTGACATCTGAGTCACGAATGCAACCCGTTCTACTTTCTACAAAACGTTTAATTTCTAAATTGGCAGAAAGAATGGAAACGGAGTAACATGATGTTTCCTGCCAGTGTCTCTGTCCTTCATACAGCCCAATGACATTAATGGCACTGTTCTCCACAGTAATGGACACTCTCTTCGCGTTGTGCACTTGTGACTCTTTAATCATAATGGAAAGGAACCATTACGCTGTACATAATGTGATCGTTTCTAATCAACTTCTACATCAAGATTCTCCATGTGCCCCTAGGGTGTAATTATCCATCCTGGGGAGAGAGTGAAAATAACAGTCATAGATGGCGAAGACACAGATGCCTATTGAGCTTTTAACATGTATAAAAACGAGTCTTAATTAGAGATCCTGTTGGACTCCCTTCTAATTAGCTATCGGATGCCAAGCACAGGGCTTCCTGTCTGGAGGGCAACCTTTGCTAAACTATGGAGATGTTGGCTTATCAAAAACACAGAGGAAAGGAGTTCAATTActgtttttaaaccttttctGAAGTCCTCCCTTCTCCAGACATCTTTCTCTGATTTTGAAGAATATGAGGATAAAATGAAAGCCTTAATTAAGACAGTTATTGAAGTTtgaattaatttttttctcatgaAAGATCAATTATGGTCAAGCAACTtccctctccacacacacacacacacacacac

Function

GO: NA

KEGG:

id description
K16519 AKAP2; A-kinase anchor protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006120 True 5822 mRNA 0.40 8 16528222 16566157

Neighbor

gene id symbol gene type direction distance location
AMCG00006119 NA coding downstream 27644 16498652 ~ 16500578 (-)
AMCG00006084 ptbp1,LOC106613576 coding downstream 40995 16464012 ~ 16487227 (-)
AMCG00006110 LOC106574064,LOC106613575,LOC105011408 coding downstream 240894 16277086 ~ 16287328 (-)
AMCG00006109 LOC104962492 coding downstream 319544 16190630 ~ 16208678 (-)
AMCG00006108 NA coding downstream 347686 16155306 ~ 16180536 (-)
AMCG00006117 NA coding upstream 61816 16627973 ~ 16637966 (-)
AMCG00006146 NA coding upstream 81865 16648022 ~ 16660916 (-)
AMCG00006147 NA coding upstream 94795 16660952 ~ 16681468 (-)
AMCG00006144 med16,LOC106613614 coding upstream 128555 16694712 ~ 16703925 (-)
AMCG00006145 NA coding upstream 156053 16722210 ~ 16749395 (-)
G156228 NA non-coding downstream 456694 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 465150 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 528183 15994787 ~ 16000039 (-)
G156203 NA non-coding downstream 580695 15947208 ~ 15947527 (-)
G156113 NA non-coding downstream 912435 15615562 ~ 15615787 (-)
G156344 NA non-coding upstream 108641 16674798 ~ 16676047 (-)
G156378 NA non-coding upstream 298941 16865098 ~ 16922863 (-)
G156668 NA non-coding upstream 1566172 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 1572362 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 1867449 18433606 ~ 18434245 (-)
AMCG00006118 NA other downstream 6533 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 66057 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 571132 15954076 ~ 15957090 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 1036580 15433432 ~ 15491642 (-)
AMCG00006102 slc5a5 other downstream 1520243 14998500 ~ 15007979 (-)
G156341 NA other upstream 85383 16651540 ~ 16680772 (-)
AMCG00006127 NA other upstream 381840 16947997 ~ 16963650 (-)
G156907 NA other upstream 2709043 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 2882774 19448931 ~ 19463205 (-)
G157059 NA other upstream 4143642 20709799 ~ 20712216 (-)

Expression


Co-expression Network