AMCG00006123


Basic Information

Item Value
gene id AMCG00006123
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17424838 ~ 17442831 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006123
gaaGTCATGTGACCGTGCTCGTGTGTAACGCAGGTAGCTCGCCGGTAGATGAGGGAGAAAATGGGGGCGGGGGGTGAACtcgattattttaattatcattataagACCATTTGGCAGCCTGAATAGGGGAGTTTAGTAGCACTGTGGTGTGCAATGCTCGCTGCATAACAGGCGTATATTGATTCACTCCGCCACTGCTTTAGCATGACACTAGTTTCGATTCCTTAAAACACATTACACTGTTGAGCTGAGCAGCTTTCGCAGAACACGGTCCGACCGCAGCCAGCCCGACTCACACCGACACAGGCGCTGCAATTCAGGACGAACTGAGTGACACTACAAACCAGCTAAATCAAGGAATACATCATGTTTTATAATCCCAGAAGCCACTTCTCCTAACACTATCAAACTGACATCGCGTTCAGCCGTGTTTGGTGGCAAAACCTGAAGGAAAAGGCGTACAGAAAGCTGGTTTCTGAAATCTGCACGTTTTCATATCATTTTGGATCGGGACTACACACGCAAGGGCACGATGGCAGACGAGCTCTCCATGCCGCTGTGCCAGCGTCTGTCCTACTCGGTGGGACACTTTCTGAACGACCTGTGTGCCTCCATGTGGTTCACGTACTTGCTGGTGTATTACCACTCGGTCCTGGGCTTCATGAATACCTACGCGGGCATCCTGCTGCTGGCCGGGCAGGTTGCGGACGGGATCTGCACCCCTCTGGTCGGGTACGAGTCGGACCGGACGGCAGGTTGTGGGACATACGGGAAGAGGAAGACCTGGCATCTCGTCGGGACCATTAGCGTGCTGTTGTCCTTCCCTTTCATCTTCAACCCCTGCCTAGGCTGCTCAGAGGACACTCCGCAGTGGGTGGGTCTCACCTACTTCGTCCCTTTCATTGTCATCTTCCAGTTCGGTTGGGCTGCCACACAGATCTCCCATTTGTCCCTCATCCCAGAGCTGGTCACCAACGACCACGAGAAGGTGGAGCTCACAGCTTTCAGGTACGCCTTCACGGTGATCGCCAACATCACGGTGTATGCCGTGGCCTGGCTGCTGTTTCACTTCCAGGCGGGGCCTGCTGAAGACCCCTCCGTGATCGATAGCCTGAGCCATCAAGATATCCCCATCTTCAGGAACTTGGCCCTGATTGTGGTCGGAATTGGGGCAGTTTTCTCTTTGCTGTTCCACTTTGGAACCAAGGAGAAGGGGCACTCCCCGGTGGAAGCAGCCAGCGATGACAGGGAGAAGCAGCCCCTGATCCTGCGTGCGCTGCCCGCCCAGCCACACTCACTGCTGCAATGGAAGCATTGGTTGAAGGAGCCGGCCTTCTACCAGGTGGCTATGCTTTATATGTGCACCAGGCTGATTGTGAATCTTTCCCAGACCTACATCTCCATGTATCTGACCAACTCCCTCATGCTGCCCAAGAACTACATTGCGACAATCCCACTGGTGATGTATGTCTGCGGCTTTGTCTCCTCTCTGGTGATGAAGCCGGTCAACAAGCTGATTGGCAGGAATattacatattttataggCCTCTTGCTGATCCTGGCCTTTGCCTACTGGGTGTTGCTGGATATGAATATGGGGAAGTCGGTGTACGGTGCCGCCGTTCTGCTGGGTGCTGGGTCGGCCACGATCTTGGTGATGTCACTCTCCATGACGGCGGACCTCATCGGGGGTCAGACACAAAGTGGGGCCTTCGTATATGGGGCAATGAGCTTCACTGACAAAGTGGCCAACGGGTTAGGAGTCATGATCATTCAGTCTCTCCATCCCTGCCAcaCTCAGGCCTGCTGTCCAGACTGTATTTGGTTCTACCACCACATCATGGTGATTGTCACCGGGGGCGTGGCGTTCGTGGCATCCATTGTCCTCTGTACTATTATGATCTGGCCAATCAAAATCCGATCTCatCTGCCCTATATCTCCGGCCTAATGGGGACAGACACTGAGGACACGGGAAATGATCAAAGTGTCAACTGAGGCAACTTTCCCTGAACCTGCTTTCCAACAgactattgcactctgtacacCAGCCCTCTCTCGGGACTGGGTAACAAAAGGGAAAGGGAACTATCAATTGTGAACAGGTTTCTTTTGAGCTACAAGAATCCTAATCAGCTCACTACAAAATGTTACATTCTGGAGAAAGTTTACAACTGAAAACTGCCCCAAATCCTCTTTATCTTTACACGTCTTAACTGTACAATAACTTAATTTGCTGTATGTCAGTGAAACTCCCTGCAATTAAGAGAGATTGAAAACTGAGAAACCGATGAACATGGTGTGGTTTACACCAATCCAAAAACTCATTCCATTTAAAGAGCGGCGAGTAGGTGATGAATAGGGGAAATTTGAAGACTTATTGTTCAAATTAAGGCAGTTGGGTTATAGAAAAAATTGGCGCCCGATAAACTGGAGCAGTCTGCGTTAACCGCTTCAGATGCATATGGTGGAGGTTGCAGTAGGTTGAACTTCTCCGAATGAAAAGGGAAAAGCTGCAAGTGTTGGAGTGGGGATATATTTGTATCGGGCAAATATAAATGACTCTACAAATACTACATGAACAGTTCTGATGCCTTCAGTGACCGTGGGGCATAAtagctttgatttaatcttctATGGACATCTGAGTTTGAGCCATAAAACTTTTCTCAGTGTGACGATCGTTACTTTGTGctgttaaaaactaaaataactaatactgatttaaaagtatttttttcttgaaaacaaaataacaatctCCTCTTTGGAAGAATAGCATCCTTTAGAGTACAACAAATcttaaaaacaagattaaagtCATATATGACAcattcttttttgtattgtgatCAGTGCAAGTGAGATGTACTTCACACCCTGGGCTGTACTCCAGTGGTACAGAATGTGGAAATATGCTATCTCACTAAGGAAGCCAGCTGAGAACCCTAATGACTTGAGTGTGAGTGTAAATAGGTCTAGACATGGTGAATACCTGGAATAGCTGAGGTTTGTGACAAAACCCATCGGAGGACATAAGAAGGGACgcacaatacaatatacaaatatataaagaagaGCTTAGTAAGAGGTGGAATTATCTTGTTCTTGAAATCACTGCCTTCTTTTTACATTGAGGGTGAAAAAGGATTTGCTCTtcactttattttctctgtacTAAAGGTAATCTATTTAGTCAGAGCTAGTTAtacttgaaaatgttaaatattcaatttagaTCATAAGATCTATGGTGGTAAGTCAACTTCAAGCTTGGTCAAACTGTGCTAAAATAGAATAAAGCTCTATGTACaagtattttaagaaaataaaaatataaaagtatccCTACATATATTTTAGCTTCATGTTTGTTCAGCTGTTGAAGTGAGATTTTGAGGTATAGATGTATAATAGCTGTTTCTTTTGACGTGTGTAAGCCACAGCATTACTTTTTTGCACTGGGTTTCACAGTATTCTACAAGAGACAAAGCAAGCATCAAGGCAACGTTTTAAAACCTGAAGTGGATTTTGGATAGAGTGTCATTTTgagttacatttttcattttttttttttttatcgaaTCAAAATGCCTGTGCTTAAGAAGTGAAGAAACTGCTGTCACATACTATGCCTGCAAATTCCCTTTGGGGTTCCTGTTGTTTTCAATGCTCATCACCACTCCATCGTCTGTCACTGAAGTCTCAGACAGGCATTCTACACTTTAATGATGGGCATTGGATTCTGACTAGTGGCATTTCTCTTTCAGCATGTGTCCGTGCCAGTGTCTGCATTCTGTGTAAATACTTTCTTGTCACTTTACCAGTGTGACCGAGATCAGCTGGAACATAAGAAATATGTGATATGTGTACCAcctaatgtataaaaaaatgttttgtaatgctaatattgtatatgaaataataaatacatgattgtgGAAGGTTTCTGTAAGCATCCTAAAGAAAAGAATACCATGTTTCTCTGTGGTGTAAATCAGTAGTGGCTTTTGCACCATAATAAACCTGCCTACTGAAGTAGATCACAGAGTTCTCCTGCCCCAGTATTGTGCAGTAGCTGTTGAGACAGAATTGCAGATATAGTGattttaactctgaaatatGACACATGTTGTCTAATTTGATTGGTTGATTGTACAGAAACtgagtaatatttattacaaagtattttatgatgtattgatgtggaTAATGAGTTTGAGGAAGAACtatgttttttaggtttttatatCGGCCTATATGAACAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006123 True 4268 mRNA 0.44 10 17424838 17442831

Neighbor

gene id symbol gene type direction distance location
AMCG00006122 nfic,LOC107585880 coding downstream 143239 17273785 ~ 17281599 (-)
AMCG00006121 nfic,LOC106613851 coding downstream 198953 17187308 ~ 17225885 (-)
AMCG00006152 fzr1,fzr1a coding downstream 330190 17083964 ~ 17094648 (-)
AMCG00006153 NA coding downstream 373086 17036827 ~ 17051752 (-)
AMCG00006133 NA coding downstream 396460 17023028 ~ 17028378 (-)
AMCG00006124 csnk1g2,LOC106925954,LOC106953035,LOC102231174,LOC104921814,LOC103359437 coding upstream 7742 17450573 ~ 17468843 (-)
AMCG00006137 NA coding upstream 78993 17521824 ~ 17523344 (-)
AMCG00006157 NA coding upstream 101675 17544506 ~ 17558968 (-)
AMCG00006155 mknk2,LOC107731184,LOC107695256,LOC107585877 coding upstream 124865 17567696 ~ 17587595 (-)
AMCG00006154 LOC101067073,LOC104921817,LOC103368804,LOC108238466,LOC103137270 coding upstream 154891 17597722 ~ 17612378 (-)
G156378 NA non-coding downstream 501975 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 748791 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 1353310 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 1361766 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 1424799 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 689498 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 695688 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 990775 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 1089231 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 1090352 18533183 ~ 18538243 (-)
AMCG00006127 NA other downstream 461188 16947997 ~ 16963650 (-)
G156341 NA other downstream 744066 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 903149 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 962673 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 1467748 15954076 ~ 15957090 (-)
G156907 NA other upstream 1832369 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 2006100 19448931 ~ 19463205 (-)
G157059 NA other upstream 3266968 20709799 ~ 20712216 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) LOC103040822 LOC108429994 misc NC_035909.1 CM008312.1 21581745 ~ 21585479 (-)