AMCG00006127


Basic Information

Item Value
gene id AMCG00006127
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16947997 ~ 16963650 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006127
ATTCAGTCTCTGGCAGTGACTCAGCCGGGCAATGTCTCTGTCAAAATTGGACAGACAGCCACTATCCCCTGCAATGTTGGGAAAGAGGCTGGTAATTTTATGCACTGGTACAAGCAAATACCAGGGGAGACACCtcagtttattttcagattCCATCACTCACTCAGCACACCTGACATTTATGGCCCTGGAATCTGCTCCAGCAGGTTCACTGCAAAGGCAACAGATTCTCTGAACTATCAGTTGATAATAAACAGTGTGGAAAGCAGAGACACAGCTGTATATCACTGTTGCAACTGGATAAGTAGTGGTGTTCAGTCTCAGGCAGTGACTCAGCCAGGCAGTCTCTCTGTCAGGATTGGACAGACAGCCACTCTCCACTGCAATGTTGGGGTGGATGAGAATGGATACATGTCCTGGTTCAAGCAGACACCAGGAGAGAAGCCtcagtttattttcagattttatcaCTCACACAGCGCACCCGACGCTTATGGCACTGGATTCTCCTCCAGCAGATTCACTGCAAAGGCAACAGACTCTCTGAACTATCAGCTGCTGATCAGCAGTGTAGAAAGCAGCGACACAGCTGTGTACCACTGCGCCAACTGGAGAGACAGCGGTGACGCGGGGACCCTGCCTAAACCAACGGTGTCTATTCTCCCACCCAGCGCCGATGAACTAACCAAGGGCACTGCCACTCTGCTTTGCTTGGCGAACAGAATCTCAGTGCCTTTCGTGGACGTGTCCTGGATGGCCGATGGAAAGCAGGTGTCCACCGGTGTGGGGACGAGCGTTTCTTCCAAGGGCAGTGACGGCTTTTTCGGCGTGAGCAGCTTCCTGACGCTGCCGGTCACGGAGTGGAGCAGTGGGCCGAAGGTCTACTCTTGTGCCGTGCAGCAGACGGGCTGGCCTGACAAAGACACGGCTCAGATTCGGAAGTCTGACTGTGGAGTCTGACGACCTCTGTTTCCCCAATGAATAAAGTCAAAGTCTGCcacttcttttcatttttagcattattttgagttgtttttgtaGCGCATGAATCTTCAATTAGTCAAGCCAGCTTTAGACCATTTCCAAAGTGGACAAATGTTACGatttttacaaatgttataAAAGATTGGATTATTATACATTTGCTTTATGTCTCTTTTGACTGTGCTCTTTCTgtgtatctttttatttcttgatgCCATTctaagcaaataaaatacacgTTGATGAA
>TU196984
CCTGAAGATTGTATCTGAAGGTGTATAGGTGAAGAAGGCAGCCCTGGGTCTCTATACACTTGCAATCCATGCAAGGTTTTTGTACGAGAGAAAATCACAGATAAATCACTGTGTGTATTCGGCCAAGGCACCAAACTGACAGTCCAAGGTGACGCGGGGACCCTGCCTAAACCAACGGTGTCTATTCTCCCACCCAGCGCCGATGAACTAACCAAGGGCACTGCCACTCTGCTTTGCTTGGCGAACAGAATCTCAGTGCCTTTCGTGGACGTGTCCTGGATGGCCGATGGAAAGCAGGTGTCCACCGGTGTGGGGACGAGCGTTTCTTCCAAGGGCAGTGACGGCTTTTTCGGCGTGAGCAGCTTCCTGACGCTGCCGGTCACGGAGTGGAGCAGTGGGCCGAAGGTCTACTCTTGTGCCGTGCAGCAGACGGGCTGGCCTGACAAAGACACGGCTCAGATTCGGAAGTCTGACTGTGGAGTCTGACGACCTCTGTTTCCCCAATGAATAAAGTCAAAGTCTGCcacttcttttcatttttagcattattttgagttgtttttgtaGCGCATGAATCTTCAATTAGTCAAGCCAGCTTTAGACCATTTCCAAAGTGGACAAATGTTACGatttttacaaatgttataAAAGATTGGATTATTATACATTTGCTTTATGTCTCTTTTGACTGTGCTCTTTCTgtgtatctttttatttcttgatgCCATTctaagcaaataaaatacacgTTGATGAA

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006127 True 1231 mRNA 0.48 3 16947997 16963650
TU196984 False 757 TUCP 0.47 3 16947997 16950117

Neighbor

gene id symbol gene type direction distance location
AMCG00006128 NA coding downstream 6860 16922895 ~ 16941137 (-)
AMCG00006126 wdr18,LOC106613619 coding downstream 42194 16903593 ~ 16905803 (-)
AMCG00006129 NA coding downstream 103065 16835879 ~ 16844932 (-)
AMCG00006145 NA coding downstream 198602 16722210 ~ 16749395 (-)
AMCG00006144 med16,LOC106613614 coding downstream 244072 16694712 ~ 16703925 (-)
AMCG00006132 NA coding upstream 16895 16980545 ~ 17008274 (-)
AMCG00006131 NA coding upstream 58619 17022269 ~ 17022594 (-)
AMCG00006133 NA coding upstream 59378 17023028 ~ 17028378 (-)
AMCG00006153 NA coding upstream 73177 17036827 ~ 17051752 (-)
AMCG00006152 fzr1,fzr1a coding upstream 120314 17083964 ~ 17094648 (-)
G156378 NA non-coding downstream 25134 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 271950 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 876469 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 884925 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 947958 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 1168679 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 1174869 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 1469956 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 1568412 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 1569533 18533183 ~ 18538243 (-)
G156341 NA other downstream 267225 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 426308 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 485832 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 990907 15954076 ~ 15957090 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 1456355 15433432 ~ 15491642 (-)
G156907 NA other upstream 2311550 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 2485281 19448931 ~ 19463205 (-)
G157059 NA other upstream 3746149 20709799 ~ 20712216 (-)

Expression


Co-expression Network