AMCG00006130


Basic Information

Item Value
gene id AMCG00006130
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17070040 ~ 17076264 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006130
ATGGACAGACAGCTCTCCATTCTTGCCAGGACAAATGAAGCTTTCTGTTCTTCCCCTGTGGCTACTGCAACTGAGCTGTTGATCCACATGCTGAACCCcaagccacagcccaggcaacCCCCCATCCACCTGTCCAGCCATAGGTGCCTCCTGCCCCCATGGCACCAGACACTAACTCATCCACCCTACCCACTCCAGATGTATATGAAGAGCATTCTGTGGAAGCCAgcagaaaggaaaaagagaagatGGGTGTTGTAAGGTGTTGggaaagcattttttattaaatatagccACCGCTGTCAGCCCCTCccggtgattacttatgcattcaattattttctgttttgtatttgtaattaatttagaacaatttacaatttgatCAGTCataaaaactcctgattaattccattctgatttaatgttgtaacacaatgaaatgtggaaaagtccaagcagggtgaatatttttgagagccactgtattaggagaaataaaaaataaatgtaagtgaTTATAACCAAGTCACAACACTGTCTGTGACAAATGTTactgaacaaaatattattaatattcataccATTATGactcatattttattaattattttattgtaattatcaattatgtatttgacaatcattttataatgatcataattaGTTGGctataaacatttattatacCAATGTAATGTGATTGTTTGCTATAAAATTTATCCACCGg

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006130 True 730 mRNA 0.37 3 17070040 17076264

Neighbor

gene id symbol gene type direction distance location
AMCG00006125 dapk3 coding upstream 152060 16908516 ~ 16917980 (+)
AMCG00006143 NA coding upstream 338809 16723292 ~ 16731231 (+)
AMCG00006142 tmem259 coding upstream 347680 16707608 ~ 16722360 (+)
AMCG00006148 NA coding upstream 373167 16691581 ~ 16696873 (+)
AMCG00006141 NA coding upstream 389488 16674786 ~ 16680552 (+)
AMCG00006151 NA coding downstream 19418 17095682 ~ 17101861 (+)
AMCG00006150 NA coding downstream 28073 17104337 ~ 17121505 (+)
AMCG00006136 NA coding downstream 435638 17511902 ~ 17518833 (+)
AMCG00006191 NA coding downstream 712719 17788983 ~ 17811459 (+)
AMCG00006189 thop1,mepd coding downstream 775775 17852039 ~ 17877059 (+)
G156329 NA non-coding upstream 425191 16644447 ~ 16644849 (+)
G156326 NA non-coding upstream 442327 16625558 ~ 16627713 (+)
G156321 NA non-coding upstream 470182 16599532 ~ 16599858 (+)
G156302 NA non-coding upstream 564834 16504770 ~ 16505206 (+)
G156279 NA non-coding upstream 602364 16464008 ~ 16467676 (+)
G156430 NA non-coding downstream 83313 17159577 ~ 17171780 (+)
G156440 NA non-coding downstream 256272 17332536 ~ 17342156 (+)
G156506 NA non-coding downstream 446970 17523234 ~ 17524750 (+)
G156509 NA non-coding downstream 459367 17535631 ~ 17547361 (+)
G156521 NA non-coding downstream 491295 17567559 ~ 17571532 (+)
G156327 NA other upstream 440858 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 924802 16123128 ~ 16145238 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 1003142 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 1034071 16032892 ~ 16035969 (+)
AMCG00006107 LOC107709901,LOC107680255 other upstream 1081265 15964433 ~ 15988775 (+)
AMCG00006149 NA other downstream 46941 17123205 ~ 17127633 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 585926 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 669869 17746133 ~ 17764228 (+)
G156640 NA other downstream 897477 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 1113960 18190224 ~ 18356589 (+)

Expression


Co-expression Network