AMCG00006136


Basic Information

Item Value
gene id AMCG00006136
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17511902 ~ 17518833 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006136
CCTAGAGGTTATGTAGTGGCTTCTAACCTTAATATGTACTTAAAACTGACCCTCCCTGTTACACCCCCTAATGAGCTGGCTATCATAATCAGTCCTTCAATCAGCTGACAACAATATTTCTCATCTGCTTTTCCTGTTAGAGATAATCTTCACAGTATTTCAGAACAAAACCTATTGGCCACTTACAGGTTCATAGCTGCCATCATTTCCTAATGTTACACAGCGCTAGTCATATCCTCCGTCAAAAGCCTGATAGCCTGGTCCAGTTGAAGAACGTTGCTTGAAGTGGATTTCTAGCAGTACGCAAAATGAAGGTTTGGAGTATAATCTTGTGGATCCTCTGGCTTGCATCTCATTCAATCCATGCAGCCGAGAACTGCATGCCAGCCATCACAATGCGACGCGAGAGTCGGATAGTCGCCGAGGGCCAGAGCATGAACTTGAGCTGCAGCTTCTTTTGCATCATTGAGTCCCACTCCCTCCAGTGGTGCAAAGCCAGGGGCGAAAATTGTGACAACCAGTCCCTTATAAATTTCACACAGATCAATTACACCTTCTCCCTGCTTGTGGAAAAAGCCACAGAGACTCACAGTGGGCAATACTTCTGTCAAACCGTGCCAACCAACACCAAGAGCAACATGGTGACTGTGATAGTTACAGAATTCCACATCAACGTGTCCAGTGCGGCGGTCACCGTGTGCGAGGGGGTGGACATCGTCGTGAACTGCACCGCCAGCTTCCATCATGACATCAAAAGCATGGTGATATTCTGGGCGAAAGGAAAGTGTTTGGATGGGGACTTTGCCAATAACAGCCGTCAGGTCAATGAGCCTGGCCTGGCTTTCacctctctcaccctctcccccAGCACCCCACTGCACTCTGGAGAGTACCACTGCTGTGCCTCCCTCCCCACCTACACACCACTTAGAAAGAATAGTACGGTGCAGATCATTGTTGTGGGTAGAAGAGAGATACTGGACAACACAATTTTGATGTACCTGCAGTGTAAAGCTGGGACTTTCTGCCTGCTCTTCATCATTGTTGGTGTCATTCAGTCCTGCAGGAGGGGCTACTGAGCTGCTTGGCCCCCGACAGTTTGCTCCCCCAGGCTGGCAGACTGGTTTCTCCTGGCTTCAAGAGCagcaaattactttaaatgaaaataacacactGCAGTTACTGTGgttaaaaacatcaataacgATCTGTGTTTATGTGAGATCAGTAAAAAGAAACTGCTATTTaaaattctaaaatatattctaactaTATAAtcagaaatagactggataggatccttggttcacttagttattaatggacaccaaacaagcatgatgggtcgaatggccccctctcgattgtaaacttttttatgttattaatattttttacacacaaacaaatatagatatagacaGGATCTTTGATatagatatacagctctggaacaaattaacagaccactgcaattttttcttaaattagcatctctacatgtatggcagccattccattccattcatatttttatttggaatttgggataaatgttgtcagtagtttatagaatgaaacaaaaatgttcattttacccaaacacatacctataaataataaaaccagagaaactgataattttgcagtggtctcttaatcttttccagagctgtatgtcaTCAACCCTGAAAACCCTTTCTATAATATCCAGTACAATGTTGctctgatttgatttaattgtttagAAAGATAAACAGCCAGATTATTCAAAGCTGACCAAGACATGCTGCACACTGTCCGATCAGGAGACACTTTGATGCTCCCTGTACATTTAAGAGGATTAATGGTTTTTCTGCTTCTCTTTCACCATcagtacaataatacaaatatcaatATTGTACAGCAACAAACACCGTTTTAGCAATTTGGTTCCTTCACATTAAAATCGCTGCCAATGTTGTACCCCTTTCTTTATCCAAAATGTCAATCAAGAACAGCACCACAAAACCCCACTCTACTGCACCGAGATAGAGGTTTACAGAAAACACCCctttttaatttggaatcaACTGAAATAACCTCTAGTGTTATGATGCATGTGGTAGGGGAGAAAGGAAAATAAGGTTATATGAAGCCAGTGGTGACCCCACCTCGATGTATGTAGATTCCCACTGTGATCGAAAAAAACTCCAAccacataaaaaacacaagcaaatcATGAGCTACAAAGAACAGGTACTCTAGAGGCAGTATCCATCTGCTTAGAGCAGTGCTTCTCAAATGGTTTTGGCCTGCAGACCACTCAGCTGGTGCAAACATTTCCACAGACCACACATCTCTAAATACCACTAATTCAAAATGATTACTGGAACATAAACGTTTTGTAGCTGTAAAGTTGTTTTGTAGGGGGACATTTAGATCTTATCcccatttaataaaatgctaaaaCTGCTGCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006136 True 2462 mRNA 0.42 4 17511902 17518833

Neighbor

gene id symbol gene type direction distance location
AMCG00006150 NA coding upstream 390397 17104337 ~ 17121505 (+)
AMCG00006151 NA coding upstream 410041 17095682 ~ 17101861 (+)
AMCG00006130 NA coding upstream 435638 17070040 ~ 17076264 (+)
AMCG00006125 dapk3 coding upstream 593922 16908516 ~ 16917980 (+)
AMCG00006143 NA coding upstream 780671 16723292 ~ 16731231 (+)
AMCG00006191 NA coding downstream 270150 17788983 ~ 17811459 (+)
AMCG00006189 thop1,mepd coding downstream 333206 17852039 ~ 17877059 (+)
AMCG00006187 NA coding downstream 361150 17879983 ~ 17905624 (+)
AMCG00006162 LOC106613602 coding downstream 429690 17948523 ~ 17960210 (+)
AMCG00006164 NA coding downstream 485744 18004577 ~ 18008371 (+)
G156440 NA non-coding upstream 169746 17332536 ~ 17342156 (+)
G156430 NA non-coding upstream 340122 17159577 ~ 17171780 (+)
G156329 NA non-coding upstream 867053 16644447 ~ 16644849 (+)
G156326 NA non-coding upstream 884189 16625558 ~ 16627713 (+)
G156321 NA non-coding upstream 912044 16599532 ~ 16599858 (+)
G156506 NA non-coding downstream 4401 17523234 ~ 17524750 (+)
G156509 NA non-coding downstream 16798 17535631 ~ 17547361 (+)
G156521 NA non-coding downstream 48726 17567559 ~ 17571532 (+)
G156564 LOC100846954,LOC107575789 non-coding downstream 188837 17707670 ~ 17708721 (+)
G156567 NA non-coding downstream 255832 17774665 ~ 17777870 (+)
AMCG00006149 NA other upstream 384269 17123205 ~ 17127633 (+)
G156327 NA other upstream 882720 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 1366664 16123128 ~ 16145238 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 1445004 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 1475933 16032892 ~ 16035969 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 143357 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 227300 17746133 ~ 17764228 (+)
G156640 NA other downstream 454908 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 671391 18190224 ~ 18356589 (+)
AMCG00006174 NA other downstream 959295 18478128 ~ 18480087 (+)

Expression


Co-expression Network