AMCG00006140 (gadd45b,ga45b,LOC106573930)


Basic Information

Item Value
gene id AMCG00006140
gene name gadd45b,ga45b,LOC106573930
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18441462 ~ 18444082 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006140
CAATAACTAATATTGAATGTTCTTTTTGAATTCCGAAAggattgcattgcattgcacgttcgtgttttggttttctttttttatcattttctaGTTGTCTTGCTTGAAAGACGGCCTAACGATCGCTTGCCAGGGTATTCCACAGTATTCGAAATTCACGCAAACAGAAAAGTCCGGGGGATTTCTCTGAAGAGAAGGGGTTGCCAGCCCCACGTGGGCGCAGATCGCTTGTCCAATGACTGCAAAGGGTGAAAATTCTATTGAATATCGCtgaccaataaaataaaacacttccaCGACAGGCCACGCCCACGTCGAATGTACTTAAATACCTAGCGGGAGCGGACTGCGCCGCAGAAACCGACAGGAGATCACACAGAGTACACCAAGTGCAGCAGCGACTACAGGACTTGATACGTTGCACAACTGTGGAATCGCTCATTTCGAAACCTGAACGAAGTGTTTGGATTATACTCCTTCTACTGTGCCTATCAGATCGATTGTGGGATTTTATTTTGGATTGTATCCAAACCTTGTGGATTATAACCTTTTTCAACATGACTCTGGAAGAAGTCGTTGGATGCAATATCGCAGACAAAAAGATGAAAACGGTAGCCCAAGCTCTAGAAGAACTGCTGGTGACCGCTCAAAGACAAGACTCCCTCACCATTGGAGTCTATGAGTCTGCAAAACTAATGAACATAGATCCTGACAGCGTTGTGCTGTGCGTACTGGCAACCGACGAAGAAGACGAGGATGATATCGCTTTGCAGATCCACTTCACTCTCATACAAGCCTTCTGCTGCGACAACGACATAAACATCCTGCGCGTCTCCGGCATGCAGAGGCTGGCGCAAGTCCTGGGCGAGCAGGGCACGGACAGTAACGCCAACGAGCCCAAAGACCTGCACTGCATCCTGGTCACGAATCCGCATACAGACTCGATGAAAAGCCAGGCCCTGAAGCAGGTCGGAAGCTACTGCGAGGAGAGCCGCTGCAAAAACCAGTGGGTCCCCTTCCTGGCGCTGCAGGAGCGCTGAAGACGGCTGCGAGAACGCGAAACCGACAAATGAGAATAAAAGCGTCAGTCATGGTggaaaaaaccaacacaaattcAAGATAAAATAACCTTACGGCCCCGGCTGGCAACCGTGAAGGAGCTGGGAGTTGGAAAGAAGGTTGAAGGGACAGTGCAGCCCCGCCTCCCCCACATCCACCCCCCGCGCAACGGAACAGCCCGGCGGGGGTTGCTGGAAAGTCGGCCGTCGGGCAGTGACGGAGTGTCGCCGTGGTCTGACGGGCGGAGAGGACAGAGCCTCGGAGCCGAGGGCGGCGTGGGGGCAGCCTGCCAGTTTTACACTGTGGGGGGGAAACTGTTCTGACCAATGCTGAGCCTGTTACATTGGGGAGAGGGAAAACCACCCCCCTTACATGGTCGAAACGAACGGTTCATACTGTTAGGAAATGTAAATGACTAGTATTCTAACCGTCAAATGATTTGAAcaagcattttatatttttttcgaGCAATGAAAAATGAGCTGCTTTACAGTTTGGACTGCAAGGGACTTGTTTTCAGTCACTACCTGaagcagtacattttatttttactgtccCTGGGTTTAAGGACTTTCCCATGGGGTAGTGCAAGATGTGCTTCGAAGTTTTATGAtgaaagaataatatatttgtgtgttttttatttatgaaattgtTATA

Function

symbol description
gadd45b Involved in positive regulation of JNK cascade; positive regulation of apoptotic process; and positive regulation of p38MAPK cascade. Located in cytoplasm and nucleus.

NR:

description
PREDICTED: growth arrest and DNA damage-inducible protein GADD45 beta

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006140 True 1719 mRNA 0.49 4 18441462 18444082

Neighbor

gene id symbol gene type direction distance location
AMCG00006165 NA coding downstream 409293 18013807 ~ 18032169 (-)
AMCG00006163 LOC101062949 coding downstream 443391 17984542 ~ 17998071 (-)
AMCG00006192 NA coding downstream 507077 17906040 ~ 17934385 (-)
AMCG00006135 sgta,LOC107656077 coding downstream 589491 17835894 ~ 17851971 (-)
AMCG00006134 slc39a3,LOC106573935,LOC106613601 coding downstream 615230 17817521 ~ 17826232 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding upstream 193415 18637497 ~ 18668381 (-)
AMCG00006158 mllt1,LOC106584372 coding upstream 305752 18749834 ~ 18762648 (-)
AMCG00006160 mllt1,LOC108432507 coding upstream 330843 18774925 ~ 18780393 (-)
AMCG00006171 NA coding upstream 370335 18814417 ~ 18821406 (-)
AMCG00006172 NA coding upstream 389248 18833330 ~ 18852079 (-)
G156696 NA non-coding downstream 7217 18433606 ~ 18434245 (-)
G156670 NA non-coding downstream 296687 18138519 ~ 18144775 (-)
G156668 NA non-coding downstream 303957 18132329 ~ 18137505 (-)
G156378 NA non-coding downstream 1518599 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 1765415 16674798 ~ 16676047 (-)
G156716 NA non-coding upstream 87980 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 89101 18533183 ~ 18538243 (-)
G156791 NA non-coding upstream 297269 18741351 ~ 18742209 (-)
G156812 NA non-coding upstream 396719 18840801 ~ 18843916 (-)
G156846 NA non-coding upstream 511641 18955723 ~ 18956035 (-)
AMCG00006127 NA other downstream 1477812 16947997 ~ 16963650 (-)
G156341 NA other downstream 1760690 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 1919773 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 1979297 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 2484372 15954076 ~ 15957090 (-)
G156907 NA other upstream 831118 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 1004849 19448931 ~ 19463205 (-)
G157059 NA other upstream 2265717 20709799 ~ 20712216 (-)

Expression


Co-expression Network