AMCG00006150


Basic Information

Item Value
gene id AMCG00006150
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17104337 ~ 17121505 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006150
ATGGCCAATGAAAAGGAGATTGAAGCAGTGGGCAAGATCCTGGTGGACTCCCAGCAGCCCCTCAAAGCTCGTTTCAGGGCTCTGTTCACCCTGAGGAACCTGGGAGGAAGCATGGCTATAGACTGGATAAGCAAGGCCTTCACAGACGATTCTGCTCTTCTCAAACATGAGCTGGCATACTGCCTGGGCCAGATGCAGGACGAATACGCCATCCCCTCACTGATATCGGTCCTAGAGAACACCAAGCAGGAGCCAATGGTTAGACACGAAGCAGgAGAAGCACTTGGAGCAATCGGAAACCCCAAAGTCCTGAATGTGCTGAAGCGCTACTCTGAAGATCCTGTGATAGAGGTGGCTGAGACCTGTCAGTTGGCTGTGAAGAGGATCGAGTGGCTGATCAGCAGTGAGGAGAAGGGCAGTGACGACAACCCCTACATGTCTGTGGACCCCGCCCCCCCTGCCATGGAGAGGAGCATCCCCAAGCTCAGAGCCAAGCTGCTGGACGAGTCCCTGCCGCTGTTCGAGCGCTACAGGGCCATGTTCGCCCTCAGGAACCTGGGCACCGAGGAGGCTGTTCTGGCACTGGCAGAAGGACTGCAGTGTGGCAGTGCTCTGTTCCGCCACGAGATCGGGTATGTCCTGGGGCAGATGCAGCATGAGGCTAGTGTGCCCCAACTGAGTGCGGCGCTTGGCAGGCACGAGGAGAACGCCATGGTGCGGCACGAGTGTGCAGAAGCCCTCGGAGCCATCGGCAAGGAGCCCTGCCTACAGGCCCTGCGGGATTACCTGGGCGACAGTGAGCGTGTGGTCCACGAGAGCTGCGAGGTGGCGCTGGACATGTACGAGTATGAGAACAGTGGGCAGTTTCAGTATGCTGATGGACTGGCCAGGCATGCCCCTGACGAGAACAAGGGGGGATACTTCCTCGATTACATCCCCCCAGCCCGGGACAGCATCCACCTGCCCAAATTTGCCCTATACCTCCTCATAGGAGCACTGATTGTTGTCACAGCAGCATACGCCATAGTCGGACACCTGATCAAGGACTTGCTCCATGACCTGGCAGATGAGGATCAAGTGTTTTTTGAGGATTACAAACCCCCAGCCAGGGATGCCATCCACCTGCCCAAATACATCCTGTACATGCTGATTGCCAGCCTGATTGTATTCTCTGTCCTGTACGCCATCATCGGACACCTCATCAAGGACCTAATGCATGACCTGGCAGACTGTCTGTTTGGGAAGGAGCCCGAGGAGGAGATTGTCAGCCCCTGGCAGTGTACGGACAAGTTCCAGGCGGACTGGTGCCCAGAGACGAGCCCAGAACTGGAGGAGCTGGCGCGGGCAGAGCAGATTGAGGTGCTGGTGGAGAGCAGGATGGGGTTGCCAGCCATCTGGGTGATATCAGATGCCAGGGAGAGTCGCCCACCCCGAACTGGACCCAGG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0008612 peptidyl-lysine modification to peptidyl-hypusine biological_process
GO:0046872 metal ion binding molecular_function
GO:0019135 deoxyhypusine monooxygenase activity molecular_function

KEGG:

id description
K06072 DOHH; deoxyhypusine monooxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006150 True 1446 mRNA 0.58 7 17104337 17121505

Neighbor

gene id symbol gene type direction distance location
AMCG00006151 NA coding upstream 2476 17095682 ~ 17101861 (+)
AMCG00006130 NA coding upstream 28073 17070040 ~ 17076264 (+)
AMCG00006125 dapk3 coding upstream 186357 16908516 ~ 16917980 (+)
AMCG00006143 NA coding upstream 373106 16723292 ~ 16731231 (+)
AMCG00006142 tmem259 coding upstream 381977 16707608 ~ 16722360 (+)
AMCG00006136 NA coding downstream 390397 17511902 ~ 17518833 (+)
AMCG00006191 NA coding downstream 667478 17788983 ~ 17811459 (+)
AMCG00006189 thop1,mepd coding downstream 730534 17852039 ~ 17877059 (+)
AMCG00006187 NA coding downstream 758478 17879983 ~ 17905624 (+)
AMCG00006162 LOC106613602 coding downstream 827018 17948523 ~ 17960210 (+)
G156329 NA non-coding upstream 459488 16644447 ~ 16644849 (+)
G156326 NA non-coding upstream 476624 16625558 ~ 16627713 (+)
G156321 NA non-coding upstream 504479 16599532 ~ 16599858 (+)
G156302 NA non-coding upstream 599131 16504770 ~ 16505206 (+)
G156279 NA non-coding upstream 636661 16464008 ~ 16467676 (+)
G156430 NA non-coding downstream 38072 17159577 ~ 17171780 (+)
G156440 NA non-coding downstream 211031 17332536 ~ 17342156 (+)
G156506 NA non-coding downstream 401729 17523234 ~ 17524750 (+)
G156509 NA non-coding downstream 414126 17535631 ~ 17547361 (+)
G156521 NA non-coding downstream 446054 17567559 ~ 17571532 (+)
G156327 NA other upstream 475155 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 959099 16123128 ~ 16145238 (+)
AMCG00006113 slc35e1,LOC106573890 other upstream 1037439 16054035 ~ 16066898 (+)
AMCG00006111 smim7,LOC106573893 other upstream 1068368 16032892 ~ 16035969 (+)
AMCG00006107 LOC107709901,LOC107680255 other upstream 1115562 15964433 ~ 15988775 (+)
AMCG00006149 NA other downstream 1700 17123205 ~ 17127633 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other downstream 540685 17662190 ~ 17735084 (+)
AMCG00006190 LOC107695212,LOC107676806 other downstream 624628 17746133 ~ 17764228 (+)
G156640 NA other downstream 852236 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 1068719 18190224 ~ 18356589 (+)

Expression


Co-expression Network