AMCG00006153


Basic Information

Item Value
gene id AMCG00006153
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17036827 ~ 17051752 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006153
AGTGATCTGAGGCTAGTGAATGGTGGCGGTCCTTGTGCTGGGAGAGTGGAGATTCTTGATGGAGGACAATGGCATACAGTTGAAGATGAAGGTTGGGATGTATCTAATGCTGTAGTGGTATGTAGACAGCTGGGCTGTGGGCATGCTCTGTCAGCACCAGGAGGAGCTCACTTTGGACAAGGGTCTGGACCGGTATGGCCAAAACGAATTTCTTGCAGGGGGTCAGAATCTTTCCTGAGGGACTGTGGATCAAAAGAAGCCAAGTATTTCATCTACTCCCATAGTGCAGATGCTGGAGTAATCTGTAGAGATCATCGAGGAGTCAGGCTGGTAGGTGGAAACAGTTTCTGCTCTGGGAGAGTTGAAGTACAGCTTGGTCAAAACTGGGGCACGGTATGTGATGCTGACTTTGACTGGCAGGATGCAGAGGTGGTCTGTCGACAACTGAACTGTGGAATTCCATCAGATGTGCTGGGGATGTCTCATTTTGGGAGTGGGGAGGGCCAGGTCTGGTCAGAAGAGATCCAGTGCAAGGGCAATGAATCTCAATTGTTTTTTTGCCCCAGTTCAACAACACAGAAACCTGGCTGCAATCATACGAATGATGTGGGGCTGGTGTGTTTTGGGTACACAGATTCCAGGCTGCTGAATGGGACTGACTCTTGTTCTGGCAGAGTCGAGCTGATGTATCTCAATGAATGGGGGACAGTTTGTGATCGCTATTGGGATTTGAGAGATGCAAACGTTTTGTGCCGGCAGATGAACTGTGGGTTTGCTCTAGCAGCCCTAGGACAAGCCAGGTTTGGTGAAGGCACTGGTGTTATATGGAAAGATCACTTCAACTGTGATGGTAGTGAGTCACACTTAAAGAGGTGTTCCATCTTTGCGCTTGGACAAGATGCATGCTTTCATGGGAGTGATGCAGGAGTAATATGTTCTGgctcATCTCTCACAGCAGTGTCCCCTGTAGATGGTCACTGGGAAGACCAGGTGGAGGTTTACTACAATGGAATCTGGAGACGAATTCTCGAGAACAGCTTGAGTTTCAGAGAGGCCTCTGTGGTCTGTAGACAGCTGGGCTGTGGCTCTGCAATAGACCATCAGTTTCTCAGGCTGGTTGGGAGTGGAGATGCCTGTGCTGGGAGGCTGGAGGTGTATCACAGTGGCTCCTGGGGGACGGTCTGTGATGACTCCTGGGACCTGGCAGACTCTCATGTGGTGTGCAGGCAACTCCAGTGTGGGACGGCCCTCAATACCCCAGTGCCAGCCTCCCTCAGCCAGGGAACTGGACCCATCTGGCTGGATGAGGTGGGCTGTCTGGGGAACGAGTCATCTCTCTCCAGGTGTCCCTCAGCCGGGTGGGGTCAACATGACTGTGGACACAAGCAGGATGTGACAATCATGTGTTCAgAGTTCAAGCAGCTAAGGCTTTCTGGAGGCTGTTCGGGACAAGTAGAGATTTTTTACAATAACACCTGGGGCGGTGTCTGTGTCAATGAAATGACTGACACTACAGCTGCAGTAATTTGTCGGCACCTGGGATGTGGAGACAGAGGTGTTTTTAAGGATACAGTATCTAGGCTGAGCACTTCCCCATGGCTAGATAATGTTCAGTGCAGACGATTTGATTCCACACTGTGGCAGTGCCCCTCGTCACCCTGGAGTCAGGACAAATTCTGGACCACTGAAGTGGCTGAAGTCACTTGCTCAGATTTTCACATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006153 True 1722 mRNA 0.51 7 17036827 17051752

Neighbor

gene id symbol gene type direction distance location
AMCG00006133 NA coding downstream 8449 17023028 ~ 17028378 (-)
AMCG00006131 NA coding downstream 14233 17022269 ~ 17022594 (-)
AMCG00006132 NA coding downstream 28553 16980545 ~ 17008274 (-)
AMCG00006128 NA coding downstream 95690 16922895 ~ 16941137 (-)
AMCG00006126 wdr18,LOC106613619 coding downstream 131024 16903593 ~ 16905803 (-)
AMCG00006152 fzr1,fzr1a coding upstream 32212 17083964 ~ 17094648 (-)
AMCG00006121 nfic,LOC106613851 coding upstream 135556 17187308 ~ 17225885 (-)
AMCG00006122 nfic,LOC107585880 coding upstream 222033 17273785 ~ 17281599 (-)
AMCG00006123 NA coding upstream 373086 17424838 ~ 17442831 (-)
AMCG00006124 csnk1g2,LOC106925954,LOC106953035,LOC102231174,LOC104921814,LOC103359437 coding upstream 398821 17450573 ~ 17468843 (-)
G156378 NA non-coding downstream 113964 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 360780 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 965299 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 973755 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 1036788 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 1080577 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 1086767 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 1381854 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 1480310 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 1481431 18533183 ~ 18538243 (-)
AMCG00006127 NA other downstream 73177 16947997 ~ 16963650 (-)
G156341 NA other downstream 356055 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 515138 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 574662 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 1079737 15954076 ~ 15957090 (-)
G156907 NA other upstream 2223448 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 2397179 19448931 ~ 19463205 (-)
G157059 NA other upstream 3658047 20709799 ~ 20712216 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC118941397 LOC106601386 misc NC_048583.1 CM023237.2 2888963 ~ 3003056 (+)