AMCG00006166 (gipc3,LOC106574151)


Basic Information

Item Value
gene id AMCG00006166
gene name gipc3,LOC106574151
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19081039 ~ 19116587 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006166
GTAGCATGCTGCAGGGGACCAGGAGGAAGAAAAGAGATCTGGGGCCAATGCAGAACGGAGAGTCCATGAGCCCACAGGTACAGGGTCAAGAGGGAGCTGGGGAAGAGCCAAACCAGATGCCCCAGACCTCTGCTCCCCCACTTTCCCCATCTCCGCCACCTCCATCAGGGCCACCTCCCTGCTCGAGGCCCAGGCTTGTTTTCCACACGCAACTGGCCCATGGAAGCCCCACAGGCCGGATCCAAGGATTCACCAACGTCAAAGAATTATATGCAAAGATTGCTGAAGTGTTCAATATCAATCCCTCAGAGATTCTCTTCTGCACTCTGAATTCACACAAAGTGGACATGCAGAAGCTCCTGGGTGGGCAAATTGGACTCGAGGACTTCATCTTTGCTCATGTCAGGGGAGAGACCAAAGAGGTGGAGGTGACAAAAACAGAGGATGCTCTTGGATTGACCATTACTGACAATGGCACAGGATATGCTTTCATCAAGAGGATAAAGGAAGGTAGCATAATTGACCGTCTCAAGACAGTGTGTGTTGGGGATCACATTGAAGCCATCAATGACCAGAGTATAGTGGGCTGCCGGCATTACGAAGTGGCTAAGATGCTGAAGGACCTCCCCAGAGGAACACCTTTCACACTGAGATTAGTGGAGCCCAAAAAAGCATTTGatatGATTGCACAGAGAACAAAATCAGGAAAGTCAAGTGGTGAAGGGAAGATGGGTAGCGGCAGAGAAACCCTACGTTTGAGATCGAAGGGATCTGCCACTGTGCAGGAGGCAccAAATGAGTTTGAAGAGATAGCAACAAAAAAAGTGGATGACCTCCTGGAAAGTTATATGGGAATACGGGACCTTGAGCTGGGTGAGTACCCCTGTTGGGTTTTGTATGTAAAA

Function

symbol description
gipc3 Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 15. Orthologous to human GIPC3 (GIPC PDZ domain containing family member 3).

NR:

description
PREDICTED: PDZ domain-containing protein GIPC3

GO: NA

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006166 True 905 mRNA 0.50 5 19081039 19116587

Neighbor

gene id symbol gene type direction distance location
AMCG00006161 myo1f,LOC108413823,LOC108264988,LOC105011638 coding downstream 193896 18853693 ~ 18887143 (-)
AMCG00006172 NA coding downstream 228960 18833330 ~ 18852079 (-)
AMCG00006171 NA coding downstream 259633 18814417 ~ 18821406 (-)
AMCG00006160 mllt1,LOC108432507 coding downstream 300646 18774925 ~ 18780393 (-)
AMCG00006158 mllt1,LOC106584372 coding downstream 318391 18749834 ~ 18762648 (-)
AMCG00006184 LOC108437281,LOC105889513 coding upstream 122778 19239365 ~ 19269061 (-)
AMCG00006199 NA coding upstream 186073 19302660 ~ 19306140 (-)
AMCG00006195 LOC102214220 coding upstream 708238 19824825 ~ 19859369 (-)
AMCG00006196 ptprd,LOC107559826,LOC107717167,LOC107744639 coding upstream 755305 19871892 ~ 19874931 (-)
AMCG00006197 NA coding upstream 763463 19880050 ~ 19881917 (-)
G156862 NA non-coding downstream 48705 19032130 ~ 19032334 (-)
G156847 NA non-coding downstream 124724 18956103 ~ 18956315 (-)
G156846 NA non-coding downstream 125004 18955723 ~ 18956035 (-)
G156812 NA non-coding downstream 237123 18840801 ~ 18843916 (-)
G156791 NA non-coding downstream 338830 18741351 ~ 18742209 (-)
G156929 NA non-coding upstream 273490 19390077 ~ 19390399 (-)
G156932 NA non-coding upstream 282847 19399434 ~ 19399637 (-)
G156935 NA non-coding upstream 285595 19402182 ~ 19413340 (-)
G156946 LOC107742786 non-coding upstream 362881 19479468 ~ 19480437 (-)
G156947 uhrf1,LOC107561590,LOC107742786,LOC107549364 non-coding upstream 368963 19485550 ~ 19489841 (-)
AMCG00006127 NA other downstream 2117389 16947997 ~ 16963650 (-)
G156341 NA other downstream 2400267 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 2559350 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 2618874 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 3123949 15954076 ~ 15957090 (-)
G156907 NA other upstream 158613 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 332344 19448931 ~ 19463205 (-)
G157059 NA other upstream 1593212 20709799 ~ 20712216 (-)

Expression


Co-expression Network