AMCG00006171


Basic Information

Item Value
gene id AMCG00006171
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18814417 ~ 18821406 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006171
ATGGCGGGGGCGTTTGCCTATGAGAGCTCGGAGGTGGACTGGTGTGAAGACAACTACAGGCACTCAGACTCAGTGGTTGAGTATTACAACACGGTGAGCAGTTtcatcttcttcatcttctccCCGCTCATGCTGTACTTGCTGCACCCTTATGCCAGGGAGAGGAGCTGGGCTGTGCACCTGGTTTGGACCATGATGATCTTTGTAGGCCTCTTCTCCATCTACTTCCACATGACCCTGAGCTACGTAGGTCAAATGCTGGATGAAATCTCCATCCTCTGGGTGCTGGCCATTGGTTATGCTCTCTGGTTTCCACGAAGACACTTTCCCAATTTCATCAAGAACAGGTCTGAGTTCTCCATTCTGGTGTTTCTGACCACTGTGTTCAGTACCCTCTCATCCTTTGCCAAGCCCACTGTCAATGCCTATGCCCTCAACTGCATTGCCCTTCACATCCTGTACTGCCTGGGCCTTGAGTTAAAGGGCTGCACTAACCCTAAAGTCCTGCGGCTGGCTTGGGTCTCCGTTGGCTGGTGGGTACTGGCCATCGGCTGTTGGCTGAGTGACCGCTTCCTTTGCAATTTCTGGAAAAGGATCAACTTCTGTTACCTGCACAGCATctgGCACATCCTCATTGTCGTGGCTACAGCCCATGGCAGTACTGTCATCGCTTACTTTGATGCCACCCACGAGATCCCCTATGCCCTGCCAGAGATCAAGTATTGGCCCAGGGATGATTGGCCCGTGGGTCTTCCATATATTTCCGTGAAAGGCTCATCCAGAACCCAGAAAAAGTGCTGA

Function

GO:

id name namespace
GO:0006672 ceramide metabolic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
K01441 ACER1_2, ASAH3; alkaline ceramidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006171 True 801 mRNA 0.52 6 18814417 18821406

Neighbor

gene id symbol gene type direction distance location
AMCG00006160 mllt1,LOC108432507 coding downstream 34024 18774925 ~ 18780393 (-)
AMCG00006158 mllt1,LOC106584372 coding downstream 51769 18749834 ~ 18762648 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding downstream 146036 18637497 ~ 18668381 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding downstream 370335 18441462 ~ 18444082 (-)
AMCG00006165 NA coding downstream 782248 18013807 ~ 18032169 (-)
AMCG00006172 NA coding upstream 11924 18833330 ~ 18852079 (-)
AMCG00006161 myo1f,LOC108413823,LOC108264988,LOC105011638 coding upstream 32287 18853693 ~ 18887143 (-)
AMCG00006166 gipc3,LOC106574151 coding upstream 259633 19081039 ~ 19116587 (-)
AMCG00006184 LOC108437281,LOC105889513 coding upstream 417959 19239365 ~ 19269061 (-)
AMCG00006199 NA coding upstream 481254 19302660 ~ 19306140 (-)
G156791 NA non-coding downstream 72208 18741351 ~ 18742209 (-)
G156717 NA non-coding downstream 276174 18533183 ~ 18538243 (-)
G156716 NA non-coding downstream 281970 18532062 ~ 18532447 (-)
G156696 NA non-coding downstream 380172 18433606 ~ 18434245 (-)
G156670 NA non-coding downstream 669642 18138519 ~ 18144775 (-)
G156812 NA non-coding upstream 19395 18840801 ~ 18843916 (-)
G156846 NA non-coding upstream 134317 18955723 ~ 18956035 (-)
G156847 NA non-coding upstream 134697 18956103 ~ 18956315 (-)
G156862 NA non-coding upstream 210724 19032130 ~ 19032334 (-)
G156929 NA non-coding upstream 568671 19390077 ~ 19390399 (-)
AMCG00006127 NA other downstream 1850767 16947997 ~ 16963650 (-)
G156341 NA other downstream 2133645 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 2292728 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 2352252 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 2857327 15954076 ~ 15957090 (-)
G156907 NA other upstream 453794 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 627525 19448931 ~ 19463205 (-)
G157059 NA other upstream 1888393 20709799 ~ 20712216 (-)

Expression


Co-expression Network