AMCG00006172


Basic Information

Item Value
gene id AMCG00006172
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18833330 ~ 18852079 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006172
CTCAAATTCAACATGGCGGACGCGCAATAATTTGTTGTAAGAAATTGCACCCTTCCGTTCTTTATTGAAATTTCCATTGCACTTTTTCCCACCCTGAAACAGAACCAAATACAGACTGGGAGCGAACCCCTATATGTAAGCCGGCGTATGACAGTCTCTCCTCCAGAAGCTGTTATCCGGCCCTCCTCCTGTCGGATCGACATACCATGATCCCGGGCTCTCCCCTGCCCCCGGCATGTCAGCCACTCCACAGGCTCACCCAGGGCCCGCCTGCGCCACAGAAGGAAAATTGTTTCCTTGTTCTTACCTTGGCTGCAAACAAGTCTTTCCAGACATTCAGAAGTTAATGCATCACACGAGAATCCACAACATCCGAACACAGTCATTACAGGGGAAACTGTTTCGTTGTTCAACCCTGGGCTGCACAGGTACATTTTCCAGCATGGAGCAGCTGATGGAGCACATGGGAAACCACTACAAACCCAACCGCTAttttgtGTGTGAGAGCTGCTCAGCCCGATTACACTCGCACCGTGCTTTTTTCAAGCACCTCCACATCTGTTCCAAGGtggccaaaaacaaaacacctcaGAAGCTGGAGAAAGTCAGAGCTGTCACTGCCACAGAAGTCACTGAATGCACCTCCAAACCAGCTGTTGCTGCCACCAGCAACACTGCTGCCTCCCTCAGCGTCCAGAGCTTCGTCCGAGAAGTGAAGAAGGAACCTGCAGCTGTGCCACTTGCGCCTTTGGCACCCCTTCCACCCCTGTCTGGACACACTGCCCCCTCAGCTGTGCCGGCACTCCCATGCAGCCTTCCCAGTCTCCAGGCCTCTCTCAGCAGCCTCCCCCTCACCACGTTGCCCTCCAACCCTTTCAGCCAGCTGCAGCCCTCTATGCTCGGAGCACCGTCCATGCCCTTCACCTCACAGACCCAGACAGAAGCTTTGCCAACCCCTTTCCTGTCCTACATGCCCCCCACTTCTTTCTCCCTGCCCCAGGCAGTGGTGCAGCAGCAGCGACTCCGAGCCCTCGCCCCTAGTCAGCCTGCTCTGCCAGTTTCCAATGCTGTCTGGAAGAAAAACCAAGGCCAGTCCTTCAACAGTCGCATCATCTGGGAGCACACCAGGGGGCGCTATAACTGCCTGCAGTGTGAGCACTCAACCCCCTCCCGCCAAGAAATGACCATTCACATCGAAGAGCAGCACAAGAGCCCCAGCAACCGCAGCCATGGTGACATGGATTTTGGGGTTGGCCTGGCTTCGCTCCATTCCAAACTGTCGCCAGAGATGGAGAACTCCCTCTTCTCACAGCTCTGATACTTTCTGCCTCGGGAGGGCAGGTGGACCGTGTATATAATGATGAAGGAGCTGGTTCTGGATAACTGCCGCTCAGATGATGGCAAGATACTGGGCCTCACTGCTGATTTCAAGAACCTGGAGTTCCTCAGCATGATCAATGTCAATCTGGTGTCCCTGGACAACCTGCCCAAACTGGGCAAGCTCAGGAAGTTGGAGCTGAGCGACAACAGGATCTCTGGAGGACTGGAGGCCCTGGCAAAGAAGACACCCAACCTGACGCACCTCAACCTGAGTGGGAACAAGATCAAGGATCTCGGCACCCTCGAGCCCCTGAAGAAGATGGCTCAGCTTAGCAGTCTGGACCTTTTCAACTGTGAGGTCACCATGCTCATGGAGTACAGGGACAGCGTGCTTGAGCTGCTGCCCCAGATCACCTACCTGGATGGCTTTGATGCGGATGACCAGGAGGCTCTGGACTCCGACGCCGATGGTGACGGGCTGGACGATGATTTGGACGAAGAAGATGAGGAGGGGGAAGATGACGAAGATGGAGACTTGGATGACGAAGACCTGGATGTGgaggaagatgatgatgatgaagatgatgaagtGGAAGCTGAAGCTGAAGATGATGAGgaggaggaggatgaaaatgaTGATGAGGATGGCGACAGCGATGAGCTggatgatgaagatgaagacgAGGATGAGACCAACCGAGGGGAGAAGAGGAAACGAGAGGCAGATGAAGATGAGGAGGATGGtgaagatgatgatgacgaCGAATGAAGACTGCTCCATTAAAGCCAATGAACTGTACACACTGAATTGTTCTGGACTGCTTTACATCAAAGACATTTGGATAGCGATGGGGATCGTGAATAGTGGGCAGATGCTTTTTGGGTGGGCAGACCCAGTCCACCCAAGCCCATCCTGTGGCCCTAACACAAAGGCTGCTGTATCCCTGAGTTAGTCTATTCTCCCATACACTCCTTCCTGTAATTTCTTCACCAGACCCTGGGGCTCCTCATATTAATGACTGAAGAAATCTTGTGATGGCAACCCCATTGTTTCAGATACTTCTTATCCCAGACTGTTTTAGACGTGCTATTTTGTTCTTCCTGGGTTAACGtcatgttttgtaattaaaaaaaaaaaaaaaaaaaaaaaaaatgcttcgTAAAAATGTCCATGGGGAGTATCGTGCAATACTTAACACCATGCACTGAGCCAACTTCATGTAGGAGAATCAGTGATGTGCACCGGTGAAAATGTTACTGTTCAAGCTGTGATCTGGGGGGGGAAAATAACATGGCACCGATCATTGAGAAAATTACTCCATTTAATGTAAAGGGTGATTTGAACCCTTCTGCGCACAtggaaaatgtacataatacattgtatagATTCAtaaccagttttgtttttatg

Function

GO: NA

KEGG:

id description
K18646 ANP32A_C_D; acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006172 True 2731 mRNA 0.51 13 18833330 18852079

Neighbor

gene id symbol gene type direction distance location
AMCG00006171 NA coding downstream 11924 18814417 ~ 18821406 (-)
AMCG00006160 mllt1,LOC108432507 coding downstream 52937 18774925 ~ 18780393 (-)
AMCG00006158 mllt1,LOC106584372 coding downstream 70682 18749834 ~ 18762648 (-)
AMCG00006159 rfx2,LOC106584375,LOC106613840 coding downstream 164949 18637497 ~ 18668381 (-)
AMCG00006140 gadd45b,ga45b,LOC106573930 coding downstream 389248 18441462 ~ 18444082 (-)
AMCG00006161 myo1f,LOC108413823,LOC108264988,LOC105011638 coding upstream 1614 18853693 ~ 18887143 (-)
AMCG00006166 gipc3,LOC106574151 coding upstream 228960 19081039 ~ 19116587 (-)
AMCG00006184 LOC108437281,LOC105889513 coding upstream 387286 19239365 ~ 19269061 (-)
AMCG00006199 NA coding upstream 450581 19302660 ~ 19306140 (-)
AMCG00006195 LOC102214220 coding upstream 972746 19824825 ~ 19859369 (-)
G156791 NA non-coding downstream 91121 18741351 ~ 18742209 (-)
G156717 NA non-coding downstream 295087 18533183 ~ 18538243 (-)
G156716 NA non-coding downstream 300883 18532062 ~ 18532447 (-)
G156696 NA non-coding downstream 399085 18433606 ~ 18434245 (-)
G156670 NA non-coding downstream 688555 18138519 ~ 18144775 (-)
G156846 NA non-coding upstream 103644 18955723 ~ 18956035 (-)
G156847 NA non-coding upstream 104024 18956103 ~ 18956315 (-)
G156862 NA non-coding upstream 180051 19032130 ~ 19032334 (-)
G156929 NA non-coding upstream 537998 19390077 ~ 19390399 (-)
G156932 NA non-coding upstream 547355 19399434 ~ 19399637 (-)
AMCG00006127 NA other downstream 1869680 16947997 ~ 16963650 (-)
G156341 NA other downstream 2152558 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 2311641 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 2371165 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 2876240 15954076 ~ 15957090 (-)
G156907 NA other upstream 423121 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 596852 19448931 ~ 19463205 (-)
G157059 NA other upstream 1857720 20709799 ~ 20712216 (-)

Expression


Co-expression Network