AMCG00006176


Basic Information

Item Value
gene id AMCG00006176
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 18456714 ~ 18467995 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006176
ATGAGGCTGCTGTCGCAGTACAGGCTGTCAGGGTTCTGGCAGGTGGGCTCTCGCTGCCGTACTGTATGGTCGGAGGATGGCCTGATGTACCCCGCTATGATTCTCTCTGTGACTGGGCAGCGCTGCCGGGTGGAGTTTGAGGATTACGGCAATGAAGAGGAGGTGGATATCGGTGCCCTGCTGCCCCCTGACTCCCAGGAGCTCCCAGATTCCCGCACTCACGTGGGCACACTGCAGGCAGGACAGGGCACAGGGACAGAGTGGCAGGTGGGCTCTCGCTGCCGTGCCGTGTGGTCGGAGGATGGCCTGATATACCCCGCTGTGATTCTCTCCGTGACCGGGCATCACTGCCAGGTGGAATTCGAGGGCTACGGCAACAAAGAAGAGCTGGAGCTCAGTGCCCTACTACCCCTCGAGACCTGCAAACAGGGTCATGAGAAATGCCCGAGCAGTGAGAGCCCAGAGTGTATGAAAGCTTCCAAGAAGGACAAGAAAAAACCCCAAAGGGGAGAGGAGCGCAAAGCTGGCGGACATGCACGCAGACCCCACCCTGTCTCCTTCAACCTGCCACCCCCCCTGTTCAGCCGCATCACGGGTGCTCATGAGGATGAGGGCAACAGGAGCAATCCTGAACCAGTGAACATCAAGGACAAGAAGATGACATCCAGAAGGGAAGGGCAAGAGGACAGCTGTTCTGGCAAAAGTCGCAGCCCTCCCTTTACCTTCTTCCCCCCTATGCCCCCTGGGTATGACTGCTCTGGGGCTTTCCTGCATCTTCcgcctcccccccctcccccagcatTTCTGTCTTCCTGCGGGAGGAGTGACAGTCCTGCAGAGGATGAGGATCTGGGTGGCCTATCTAGCATGCTCCTGTCCTGGTACCTCTGTGGATACCACACTGGCTGCTACATGGCTTTACAACAGGCGAGGAAATCACAGGAGCAAAGTCCAGAGAGAGCCCAGGCTAAATCCAAACCCAAGAAGCATTCTTATTAGTGCTGATGCCAGCGGCACCCCAGTTTcacaggctgctggcaagaagtgataggtcagaggtcagagtgGGCAGGTGGGAGGATGGACACTGAACAGGGCTGCATACCCCACAACCCCCAGATGTCCTCTGACAGTTCACTGCAAGGGAAGAACACAGGGGGAATGGGGGGATTCCTCAAGAAGCAGATAACTGAACAGATAGGACCAATCCTATATAAACCAATCACTTGCCTAATATAGATGCCGGCCCTTTTCGGATTTAATTTTTCCTTCATCCACTTGCCTTTTGAAACATATGGTGCCGATGCAGTTTCCTTACTAAAAGAGAAAGCTATTGATCAATGTTGTGttcaagtgtttattttcccttttagtgggtgtggggggggggagttttTTAAGGTGCTGAAAAGAATGCCATTTCTGCATTACTTTCTGTACCTGACCAttcaatttttacatttgtcttgcCAAGAATCTCCACACTGTTTTTGTTCAACAGGATGCTAAGAAAAGCTTAAGCTACATTTCAGCAACACTTCTACTGCACATCCCAGATCCTTATATATATCCCACTAATCTGAGTCAAGAGACTGAAGCAATCAAGCATTTGTTGATGATTCATGGTGCTCAGATAAGtaactgtaaattatatttgtatgagCAAGTGCAGATCTTTTTAGTTCTTACAACAATCCTTATTTGTGGTGGTGTGGTACCCTGAAATGCTCAGCCAGGACCAGTCTATTTGCCAAGGTTACACATGTGATTAAAATACCATTGTTTCCCCATGATTGCTTGACCCTTTTCTTTGTGTTGATCTGACGCACGGTTGGATTCCCTTCACACTTTTGATTGCATTAACATTGGCTCCCAGCTTTCTGTACTCCAATTGACACCTTAGGTGAACCCATGCCAGTGAAGGAAGTTTCCATGTGCGAAAATACAACTGTGAAGGACAGATCTGAACTGCAGACATTGTGGATGTAAGTTACAGTGCTCCAGAGTTTGTGTATatgtactgtgtatttatttgtttcctttttaaatgaacaataatttgtttgttcttgtccTTGATATTTATAAAGTCATAAGCAGCAGTAAATTGTGAACGATCTTTTTTCTGGTCTACATCACATATGCTGTAATCCCCCTGGTG

Function

GO:

id name namespace
GO:0044428 obsolete nuclear part cellular_component
GO:0032991 protein-containing complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006176 True 2161 mRNA 0.49 8 18456714 18467995

Neighbor

gene id symbol gene type direction distance location
AMCG00006177 NA coding upstream 1294 18453898 ~ 18455420 (+)
AMCG00006139 NA coding upstream 76983 18372934 ~ 18379731 (+)
AMCG00006169 diras1,LOC106573976,LOC105906138,LOC106613605 coding upstream 326218 18116638 ~ 18130496 (+)
AMCG00006164 NA coding upstream 448343 18004577 ~ 18008371 (+)
AMCG00006162 LOC106613602 coding upstream 496504 17948523 ~ 17960210 (+)
AMCG00006173 LOC106573927,LOC106613609 coding downstream 50387 18518382 ~ 18534722 (+)
AMCG00006175 fcho1,LOC107751067,LOC101065258,LOC102200842,LOC103367496 coding downstream 124632 18592627 ~ 18636029 (+)
AMCG00006170 NA coding downstream 251678 18719673 ~ 18741090 (+)
AMCG00006168 NA coding downstream 532779 19000774 ~ 19001556 (+)
AMCG00006167 NA coding downstream 542853 19010848 ~ 19012331 (+)
G156671 NA non-coding upstream 233566 18158840 ~ 18223148 (+)
G156598 NA non-coding upstream 612738 17842139 ~ 17843976 (+)
G156567 NA non-coding upstream 678844 17774665 ~ 17777870 (+)
G156564 LOC100846954,LOC107575789 non-coding upstream 747993 17707670 ~ 17708721 (+)
G156521 NA non-coding upstream 885182 17567559 ~ 17571532 (+)
G156769 NA non-coding downstream 274607 18742602 ~ 18749749 (+)
G156771 NA non-coding downstream 288931 18756926 ~ 18757205 (+)
G156772 NA non-coding downstream 289271 18757266 ~ 18757542 (+)
G156777 NA non-coding downstream 309197 18777192 ~ 18777554 (+)
G156807 NA non-coding downstream 372808 18840803 ~ 18843866 (+)
AMCG00006138 NA other upstream 100125 18190224 ~ 18356589 (+)
G156640 NA other upstream 476077 17973741 ~ 17980637 (+)
AMCG00006190 LOC107695212,LOC107676806 other upstream 692486 17746133 ~ 17764228 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other upstream 721630 17662190 ~ 17735084 (+)
AMCG00006149 NA other upstream 1329081 17123205 ~ 17127633 (+)
AMCG00006174 NA other downstream 10133 18478128 ~ 18480087 (+)

Expression


Co-expression Network