AMCG00006178 (uhrf1,LOC106613510)


Basic Information

Item Value
gene id AMCG00006178
gene name uhrf1,LOC106613510
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19473297 ~ 19492763 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006178
CCCATTGATTCGGGCTGCTGTAGTCTTTAAAGCGGAGTCCAGTCACATTGGAGCGCATACTTTGATAGTATTCTTCTTTAATTATCGTCTTTTGTTGGAGGTGTTAACAAagGTGTGAGAATGTGGATCCAGGTTCGTACTATGGATGGGAAGGAGACCCACCGGATTGATTCACTGTCAAAGCTGACAAAAGTTGATGAACTCCGGCTTAAAATCCTGGAAGTTTTTAAAGTTGaaccagagagacagagactatTTTATAGAGGCAAGCAGATGGAAGATGGCCACACCATCTTTGATTACAGCGTGGGTTTAAATGACATTGTTCAGCTGCTGGTGCGACAGGCGATGCCTGTTCGACCCACCGCCGAGCGTAAGGAGAAGGATGCGGAGCTCTCCGACTCAGACTCCGGCTGTGGATCGACCCAGAGCGAGTCGGACAAGAACTCCAATCACGGGGAGAATGCAGCCGAGGGGGAGGTGCAGGCGGGCACATCTACACAGATGGACCTGGTCGATGCTGCGTTCGGCTCTTACAAAATCAATGAGTTTGTTGATGCCCGTGATTTGAACATGGGAGCATGGTTTGAAGCGCAAATTGTCAACGTCACTAAAGAAACTAAAAGCCCCAGTGACTCTGCAGAGAGTATGACTGATCCCGAGATCAGTCAAAGCGAGGAGGAGATTGTGTATCACGTCAAATATGAGGATTATCCAGAGAATGGAGTGGTGAAGCTGTCTGGGAAAGATGTGCGCCCTCGAGCGAGGACTGTGTACCAGTGGCATCAGCTAGACGTGGGCATGGTGGTCATGGTGAACTATAACCCTGATGAACCCAAGGAAAGGGGCTACTGGTATGATGCAGAGATCCAGAAGAAGAGAGAAACCCGCACCGTGCATGAAATATATGCCAAAATACTGCTTGGGGATGCTGGCGATTCTCTCAATGACTGCAAGATCATGTTTGTGACTGAAATATACAAGATTGAAGAGCCAGGAACTGTATCGGAGAGTCCCCTGAAAAGATCCAATGGACCAGAATGTAAGCACTGCAAGGATAACCCGAGCAAGAACTGCCGCATGTGTAACTGTCATGTATGTGGAGTGAAGCAGGATCCTGACAAACAGTTGCTGTGTGATGAATGTGACATGGCCTTCCACATCTACTGCCTCAACCCTCCCCTGAGCAGCATCCCCGAGGATGAGGATTGGTACTGCCCGGACTGTCGTAATGACGTGAGTGAAGTTGTTTTAGCTGGAGAAAAGCTGAAGGAGAGCAAAAAGAAATCCAAAATGGCTTCAGCCAATTCCTCTAGCCAAAGAGACTGGGGAAAGGGTATGGCTTGTGTTGGTCGTACAAAACAATGTACCATTGTGCCCTCCAACCACTATGGGCGAGTCCCTGGTGTTCCTGTGGGCACGATGTGGAAATTTAGGGTGCAGGTTAGTGAGTCAGGTGTTCATAGACCCCATGTAGCTGGAATTCACGGAAGAAGCAATGATGGAGCCTATTCTCTGGTGTTGGCAGGAGGCTATGAAGATGATGTGGATGATGGGAACGAATTCACCTACACAGGATCCGGCGGCAGGGATCTGTCTGGCAACAAGCGAACCGCAGAACAGTCTTGTGATCAGAAACTCACAAACATGAACAGGGCTTTGGCACTGAATTGCAATGCTGTTGTAAATGAAAAGGACGGAGCAGAAGCCAAGGACTGGAAAGCAGGGAAGCCAGTGAGAGTTGTCCGCAGCTCAAAGGGACGAAAACATAGCAAGTACTGCCCAGAGGATGGAAACCGATACGATGGCATCTACAAGGTTGTAAAATACTGGCCAGAAAAGGGGAAGTCTGGTTTTCTGGTGTGGAGGTACTTGTTAAGACGAAATGATGATGAGTCAGCCCCGTGGACCAGAGATGGCAAGGACAGGATTAAGAAGCTTGGACTCACTATGCAGTATCCTGAGGGATATTTAGAAGCTGTTGCTgctaaagagaaagaaaaggagaataaGAACGAAGAGGAGGCAGTGACTGATACTCCTACCAaaggaaagaggaagagaaaatcACAAGGTGGAGATGAAAAGTCCTCGCCAAACAAGCGAACCCCCAAAAAAGTAAAGGTGGAGGCTTATAAACTAACAAAGGAGCAAAAAGGCCTGATTAAGGAGGACGAGCAGAATAAGAAGCTCTGGGATGAGGCCATGCAGTCTCTTAAAGAAGGGCCGAAATTTTTGAATAAAGTTGAAGAGATGTTTCTGTGTATATGTTGCCAAGAAGTTGTGTATCAGCCAGTCACTACAGAGTGCCAACATAATGTCTGCAGGGAATGTTTACAGCGCTCCTTCAAGGCTGACGTGTACACGTGTCCAGCTTGTAGACACGACCTTGGCAAGAACTACAACATGAGCATCAACAAACCCCTCCAAGCCATTCTGACCCAGTTCTTTCCCGGATACAGCAGTGGCCGGTGATGACACCTCCGCTCTTTGCTGCTATGTTTCAATGGAGATGTCATGAACTGTGATAGTGGTATATCAGTATAATCTGCaatgtctttttaatatatggaACAAATGGGTGTATGACAGCTTTCAGTATTGGGCTGTTAGATGTATGACTCTCTCaaattttgttaatgtaaatttTTGCAATTTATGTACAATCTTAATTAGTTCTCTGTATGTAGAAGTTAGTTGGGGGCTTATTagtttaatattaaagtaaCTGCAGGGCTTCTCAATAAATCCGTAAAGCTGTTTGTTGGCGGTGGGGGGTGCTTACCTTTTGTTAAGTCACATTGCTGAACTTTTAAAGCTGCATCATTTGGTTGTCTAAGCATCACCTTTTTATACTGGGTAACAAGGGCAAGATGTTTACTggctaattttaattaataatatgccAACATGTTTAATAAGATCTTtgtgatttagtgttttaaagtgAATAAAACTCTTCGCCATTTACTCAGTTTGCTTATAAATGTTGGATATGCTCAATTTGATTTTCCTCTGTGCGCATTCATTCATCCGGATTTAACTAGTGACTGACTAAGCCATATGTCTGTTGCATCTGGTtttagataataaaaaaaaaaatctgctgctTTCAAGAATTCTGATCTGAAGAAACAAATTTACAATTTTAGAACTAAAATCTCCATTGAGAATGCATTGAGTTCACCTCCagtattttccttaaaaataaatcttgccaAACCATTTCTGCTCCTAACTATATTGTAATGAGCATCAAGTTGATCATGATTCAGCTTGGTCTTATCTGTCACTATTAGCATGTTTATCGGGCGCATGTAATTACACTTTTCTTAAGTATGTGTTCTCACTGCTCCCTCAGAACTGACCTCAAATGTATGAACTTGGAAGTACTTCTGTTTTTGAATAGACCCAGTAAGCCATGCCATGTTTTATACTTTTGAAAGTAGTGATCcactgtataatttatttgttattccATTCATAAAGGTTAGTGACTGTTGATGATCATTGAACCAGATGACCTTAAAATTGAGGTTTTATATTTAACCATAttataattgcaaataaaaccTTCATACAGTCAAACTCGCATACAGTACAGATGTGATACTTTCTagcatttagtttttgtatggTTTATCAAACACGGCAAGGTTTCTTTTCTACAAATTTAACTTCAGATGCCTCTATTAGTCTAAAGGAAACTTAAGGTTGCTATGAATTTGAGCTGATTTCATGGCATTTgccatttaaaagacaaaatattgtGAAAAGGTTTTGAACAAGCTTTCATGCCTGACCCTCCACTGTTCctttttatgttgaaataccaGAATTAGATACCTAGTTTTTTCAAGGGAAATGTAAAACTGATTGGTGTAGGCTTTAAGTGCCTTTGCTTAGTGTGTAACTTTATATAAAACTGCACATTTGAAAGCAGCTTTAAAAGTCATTCAGGTAGTTGTATTACATGACCTTATTGTACTGGATCTTAACTTGTaccgcctttttttttttttct

Function

symbol description
uhrf1 Predicted to enable several functions, including hemi-methylated DNA-binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Acts upstream of or within several processes, including animal organ development; hypermethylation of CpG island; and intestinal epithelial structure maintenance. Located in cytoplasm and nucleus. Is expressed in several structures, including brain; eye; liver; pleuroperitoneal region; and presumptive neural retina. Orthologous to human UHRF1 (ubiquitin like with PHD and ring finger domains 1).

NR:

description
PREDICTED: E3 ubiquitin-protein ligase UHRF1 isoform X1

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0002088 lens development in camera-type eye biological_process
GO:0007049 cell cycle biological_process
GO:0010216 maintenance of DNA methylation biological_process
GO:0016574 histone ubiquitination biological_process
GO:0031100 animal organ regeneration biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0000791 euchromatin cellular_component
GO:0000792 heterochromatin cellular_component
GO:0005657 replication fork cellular_component
GO:0005737 cytoplasm cellular_component
GO:0044729 hemi-methylated DNA-binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0035064 methylated histone binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10638 UHRF1, NP95; E3 ubiquitin-protein ligase UHRF1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006178 True 4024 mRNA 0.42 17 19473297 19492763

Neighbor

gene id symbol gene type direction distance location
AMCG00006200 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 coding upstream 22239 19449208 ~ 19451058 (+)
AMCG00006185 sin3b,LOC106933771 coding upstream 92510 19349915 ~ 19380787 (+)
AMCG00006186 NA coding upstream 127089 19289399 ~ 19346208 (+)
AMCG00006183 NA coding upstream 244731 19205774 ~ 19228566 (+)
AMCG00006167 NA coding upstream 460966 19010848 ~ 19012331 (+)
AMCG00006181 kdm4b,LOC101065945,LOC106519213,LOC108234360,LOC106937923 coding downstream 30976 19523739 ~ 19539686 (+)
AMCG00006182 NA coding downstream 108050 19600813 ~ 19611165 (+)
AMCG00006180 NA coding downstream 155843 19648606 ~ 19681766 (+)
AMCG00006179 NA coding downstream 208000 19700763 ~ 19702298 (+)
AMCG00006198 NA coding downstream 285890 19778653 ~ 19779445 (+)
G156933 NA non-coding upstream 71893 19401014 ~ 19401404 (+)
G156930 NA non-coding upstream 78269 19394816 ~ 19395028 (+)
G156928 NA non-coding upstream 83077 19389963 ~ 19390220 (+)
G156868 elavl1,LOC105889513 non-coding upstream 231453 19238192 ~ 19241844 (+)
G156869 NA non-coding upstream 253019 19219804 ~ 19220278 (+)
G157009 NA non-coding downstream 730571 20223334 ~ 20223613 (+)
G157010 NA non-coding downstream 735823 20228586 ~ 20229103 (+)
G157014 NA non-coding downstream 794868 20287631 ~ 20287969 (+)
G157034 NA non-coding downstream 915755 20408518 ~ 20408775 (+)
G157056 NA non-coding downstream 1131310 20624073 ~ 20744205 (+)
AMCG00006174 NA other upstream 993210 18478128 ~ 18480087 (+)
AMCG00006138 NA other upstream 1116708 18190224 ~ 18356589 (+)
G156640 NA other upstream 1492660 17973741 ~ 17980637 (+)
AMCG00006190 LOC107695212,LOC107676806 other upstream 1709069 17746133 ~ 17764228 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other upstream 1738213 17662190 ~ 17735084 (+)

Expression


Co-expression Network