AMCG00006181 (kdm4b,LOC101065945,LOC106519213,LOC108234360,LOC106937923)


Basic Information

Item Value
gene id AMCG00006181
gene name kdm4b,LOC101065945,LOC106519213,LOC108234360,LOC106937923
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19523739 ~ 19539686 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006181
ATGGCCTCCGAAAACCCCACTGCCCAGAATCCGGGCTGCAAGATCATGACTTTCCGGCCCACAAGGGAGGAGTTCCAGGACTTTGGGAAGTACATGGCCTACATTGAGTCCCAGGGAGCGCACAGGGCTGGCTTGGCGAAAGTGATCCCTCCAGAGGACTGGAAGCCTCGGAAGTCGTACGATTCCATTGACGAGATGGTCATACCCGCACCCATCATGCAGGTTGTCACTGGCCAGTCCGGGCTCTTCACTCAGTACAACATCCAAAAGAAGTCAATGACAGTTGGAGAGTACCGCAAACTGGCCAACAGTGAGAAgTATTGCACCCCCCGGCACCAGGATTTTGAAGACCTTGAGCGGAAATACTGGAAGAACCTGACCTTTGTGTCTCCTATCTATGGAGCAGACATCAGTGGCTCCCTGTATGACAAAGGCATCGGGGAGTGGAACATTGGGCATCTGGACACACTGCTGGACATGGTGGAGCAGGAATGTGGCATCGTGATCGAGGGCGTCAACACCCCTTACCTGTACTTCGGCATGTGGAAGACCACGTTCGCCTGGCACACGGAGGACATGGACCTGTACAGCATCAACTACCTGCACTTCGGGGAGCCCAAGTCCTGGTGA

Function

symbol description
kdm4b Predicted to enable histone demethylase activity (H3-K9 specific). Predicted to be involved in chromatin remodeling. Predicted to act upstream of or within chromatin organization. Predicted to be active in nucleus. Is expressed in caudal hematopoietic tissue. Human ortholog(s) of this gene implicated in several diseases, including autistic disorder; gastrointestinal system cancer (multiple); head and neck cancer; malignant peripheral nerve sheath tumor; and withdrawal disorder. Orthologous to several human genes including KDM4B (lysine demethylase 4B).

NR:

description
PREDICTED: lysine-specific demethylase 4B-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006181 True 630 mRNA 0.55 4 19523739 19539686

Neighbor

gene id symbol gene type direction distance location
AMCG00006178 uhrf1,LOC106613510 coding upstream 30976 19473297 ~ 19492763 (+)
AMCG00006200 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 coding upstream 72681 19449208 ~ 19451058 (+)
AMCG00006185 sin3b,LOC106933771 coding upstream 142952 19349915 ~ 19380787 (+)
AMCG00006186 NA coding upstream 177531 19289399 ~ 19346208 (+)
AMCG00006183 NA coding upstream 295173 19205774 ~ 19228566 (+)
AMCG00006182 NA coding downstream 61127 19600813 ~ 19611165 (+)
AMCG00006180 NA coding downstream 108920 19648606 ~ 19681766 (+)
AMCG00006179 NA coding downstream 161077 19700763 ~ 19702298 (+)
AMCG00006198 NA coding downstream 238967 19778653 ~ 19779445 (+)
G156933 NA non-coding upstream 122335 19401014 ~ 19401404 (+)
G156930 NA non-coding upstream 128711 19394816 ~ 19395028 (+)
G156928 NA non-coding upstream 133519 19389963 ~ 19390220 (+)
G156868 elavl1,LOC105889513 non-coding upstream 281895 19238192 ~ 19241844 (+)
G156869 NA non-coding upstream 303461 19219804 ~ 19220278 (+)
G157009 NA non-coding downstream 683648 20223334 ~ 20223613 (+)
G157010 NA non-coding downstream 688900 20228586 ~ 20229103 (+)
G157014 NA non-coding downstream 747945 20287631 ~ 20287969 (+)
G157034 NA non-coding downstream 868832 20408518 ~ 20408775 (+)
G157056 NA non-coding downstream 1084387 20624073 ~ 20744205 (+)
AMCG00006174 NA other upstream 1043652 18478128 ~ 18480087 (+)
AMCG00006138 NA other upstream 1167150 18190224 ~ 18356589 (+)
G156640 NA other upstream 1543102 17973741 ~ 17980637 (+)
AMCG00006190 LOC107695212,LOC107676806 other upstream 1759511 17746133 ~ 17764228 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other upstream 1788655 17662190 ~ 17735084 (+)

Expression


Co-expression Network