AMCG00006189 (thop1,mepd)


Basic Information

Item Value
gene id AMCG00006189
gene name thop1,mepd
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17852039 ~ 17877059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006189
AGACTTTTTCTGCTGCCTTCTCAGCCATGGCCCCGACAGGTGAAGTGGTAATTGGCAGCGGGCCGCGTGTCTGTGCTGAAAACCGACTGCGCTGGGACCTGAGCCCTGAACAAATCTGCCAGCTCACGGATGAACTGATTGAAAATACCAAGAAGGTGTATGATGCTGTGGGAGACCTGGCTCTGGGCACAGTCACCTACGAGAACACGCTCAAAACTCTGGCAGACGTTGAGGTGGAATATACAGttcacCGAAACATGCTCGATTTCCCTCAGCATGTGTCCTCGAGTAAAGAAGTGCGCACTGCCAGCACCAATGCTGACAAGAAGCTGTCTGAGTTTGATGTGGAGATGAGCATGAGAGAAGATGTGTACCAGAGGATTGTAGCTCTGGAGGAGAAGATAGATGTGGACACCCTGCATCCTGAAGCCAGGAGGTACATGGAGCGATTGATCAAGCTGGGAAAGAGGAATGGGCTACACCTGACCAAAGAGAAACAAGATGAAATCAAAAAGATCAAGAAGAAGCTGAGCACCTTGTGTATTGACTTCAATAAATACCTGAATGAGGATACTACAAGCCTGTCATTCACCCGGGAGGAGTTGGGGGGTCTCCCTGAGGACTTCCTGAGCTCCCTGGAGAAAGATGAGGAGGGCAAGCTTAAAGTCACTCTGAAATACCCTCACTACTTTCCCACCATGAAAAAATGCCACGTCCCAGAAACCAGGCAGAAACTGGAGGCAGCTTTCAACTCCAGATGCAAAGAGGAAAACTCTTGCATCCTGAAGGAGCTTGTGGAGCTCCGTGCCCGGAAGAGCAGCATCCTGGGCTTCAGCACCCATGCTGATTTTGTCTTGGAAATGAATATGGCCAAGTCAGGCAAGAAGGTGGCAGTCTTCCTAGAGGATCTGGCACGAAAGCTGAAGCCCCTGGGCGAGGAAGAGCGGGCGGTCATCCTCAAACTGAAGGAGAAGGAGTGTGAGAAGAGGGGCATGCCATTTGACGTGCAGATCTACGCCTCAGATACCCGCTACTACATGACGCAGGTGGAGGAGACGCAGTATGCTGTCGACCAAAACCTCCTGAAAGAGTACTTCCCCATGGAGGTTGTGACCCACGGCCTACTGGACATCTACCAGGAGCTGCTGGGCCTCACCTTCCACCTGGAGGAGGGCGCCCCTGTCTGGCATGAGGATGTCACCCTCTACTCTGTCAAGGACCGTGCCTCTGGCAATGTCATTGGCCAGTTCTACCTGGACCTTTTCCCCAGggaGGGGAAGTATGGCCACGCGGCCTGTTTCGGCCTGCAGCCTGGCTGTCTGATTCCCGACGGGACCCGGCAGATTGCAGTCGCAGCCATGGTGGCCAATTTCAGCAAGCCCACCGCTGAAGCCCCCTCCTTATTGCAGCACGATGAGGTGGAGACCTACTTCCACGAGTTTGGCCACGTCATGCACCAGCTCTGTGCACAGGCAGAGTTTGCAATGTTCAGTGGGACCCATGTGGAGCGGGACTTTGTGGAGGCCCCATCTCAGATGCTGGAGAACTGGTTCACTTTCTTCCTGTCAGGGCTTTTCAACTTGAGACAGATTGTGTTGGCCAAGGTGGACCAGGCACTGCACACCAAGACTGGCGTGGATCCTGCTGAGGAGTATGCGCATTTGTGCCAGGAAATTCTGGGGGTGGCAGCTTCTTCAGGGACTAACATGCCAGCCACATTTGGTCATCTGGCAGGAGGCTATGATGCCCAATACTATGGTTACCTGTGGAGTGAGGTCTTCTCCATGGACATGTTTTATGCTCGCTTCAAACAGGAAGGCATCATGAATCCAAAGgtGGGCCTGGACTACAGGAACTGCATCCTGAAGCCTGGTGGTTCTATGGACGCAGCAGATATGTTGAAGAACTTCCTGGGTCGCGAACCGAAGCAGGAAGCATTCCTCTTGAGCAAAGGACTGACTGTGGAGCTAGAGGCGGGCACCCCCTGTGCCTGTTGACCTTCTCGCACCACCCTTTACTTTTCCCTCACGTCCACCAACCTGTCCCCAAGATCTACTGTGGCTAGTGCACGAGAGACTGAAATTGCTTTTGATAAAAAGTCCCTACCCCCCAGTCCCAGTAATCTCTTCTCACTTATGCTGTGTATTGAGCTTCTGAGAAAccttggctttttttttattttcttttttt

Function

symbol description
thop1 Predicted to enable metalloendopeptidase activity. Predicted to be involved in peptide metabolic process and proteolysis. Predicted to be active in mitochondrial intermembrane space. Is expressed in lens. Orthologous to human THOP1 (thimet oligopeptidase 1).

NR:

description
PREDICTED: thimet oligopeptidase

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K01392 THOP1; thimet oligopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006189 True 2190 mRNA 0.53 13 17852039 17877059

Neighbor

gene id symbol gene type direction distance location
AMCG00006191 NA coding upstream 40580 17788983 ~ 17811459 (+)
AMCG00006136 NA coding upstream 333206 17511902 ~ 17518833 (+)
AMCG00006150 NA coding upstream 730534 17104337 ~ 17121505 (+)
AMCG00006151 NA coding upstream 750178 17095682 ~ 17101861 (+)
AMCG00006130 NA coding upstream 775775 17070040 ~ 17076264 (+)
AMCG00006187 NA coding downstream 2924 17879983 ~ 17905624 (+)
AMCG00006162 LOC106613602 coding downstream 71464 17948523 ~ 17960210 (+)
AMCG00006164 NA coding downstream 127518 18004577 ~ 18008371 (+)
AMCG00006169 diras1,LOC106573976,LOC105906138,LOC106613605 coding downstream 239579 18116638 ~ 18130496 (+)
AMCG00006139 NA coding downstream 495875 18372934 ~ 18379731 (+)
G156598 NA non-coding upstream 8063 17842139 ~ 17843976 (+)
G156567 NA non-coding upstream 74169 17774665 ~ 17777870 (+)
G156564 LOC100846954,LOC107575789 non-coding upstream 143318 17707670 ~ 17708721 (+)
G156521 NA non-coding upstream 280507 17567559 ~ 17571532 (+)
G156509 NA non-coding upstream 304678 17535631 ~ 17547361 (+)
G156671 NA non-coding downstream 281781 18158840 ~ 18223148 (+)
G156769 NA non-coding downstream 865543 18742602 ~ 18749749 (+)
G156771 NA non-coding downstream 879867 18756926 ~ 18757205 (+)
G156772 NA non-coding downstream 880207 18757266 ~ 18757542 (+)
G156777 NA non-coding downstream 900133 18777192 ~ 18777554 (+)
AMCG00006190 LOC107695212,LOC107676806 other upstream 87811 17746133 ~ 17764228 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other upstream 116955 17662190 ~ 17735084 (+)
AMCG00006149 NA other upstream 724406 17123205 ~ 17127633 (+)
G156327 NA other upstream 1222857 16627793 ~ 16629182 (+)
AMCG00006089 NA other upstream 1706801 16123128 ~ 16145238 (+)
G156640 NA other downstream 96682 17973741 ~ 17980637 (+)
AMCG00006138 NA other downstream 313165 18190224 ~ 18356589 (+)
AMCG00006174 NA other downstream 601069 18478128 ~ 18480087 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location