AMCG00006200 (LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512)


Basic Information

Item Value
gene id AMCG00006200
gene name LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 19449208 ~ 19451058 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006200
ATGGATATTAAAACTGCGGTTTTCAACGCTGCCAGAGATGGGAAGCTGAAACTTATTCAGAAGTTGCTGAGCAACAAAAGTCCCGAGGAGTTGGAAGCGCTGGCGGAGGAAAAGACCCAAGGGGGCACTCCTTTACTAATTGCCTCCAGATATGGACATCTGGAGGTCGTGGACTATTTACTGGAGCACTGCAAGGCAAATGTGGAGCTGGGGGGCTCTGTTAATTTTGACGGGGAGACTATTGAAGGAGCCCCCCCTTTGTGGGCAGCTTCTGCAGCAGGGCACTTGCAGGTGGTGAGGAGTTTGCTGAAACATGGGGCGTCCGTGAACAACACTACCTTGACAAACTCCACTCCTCTGCGGGCCGCCTGCTTTGACGGCCACTTGGAAATAGTGCGCTACCTGATTGAGCACAAGGCCGACATGGAAGTGGCCAACCGCCATGGGCACACCTGCCTTATGATCTCCTGCTACAAAGGGCACAAGGAGATCGCCAAATAcctgctggagaaaggggccGACGTGAACCGCAAGAGCGTGAAGGGCAACACGGCCCTGCACGACTGCGCCGAGTCGGGCAGTCTGGACATTATGAAAATGCTGCTGAAGTGTAATGCCCGTATGGAGAAGGACGGCTATGGCATGACACCCCTGTTGGCAGCTAGTGTGACAGGGCACACCAACATCGTGGAGTACCTCATCCACCAGCCACGCTCCTCCAAAGAAGAGCGCATCGACGCTCTGGAGCTGCTAGGGGCCACCTTTGTGGACAAAAAGAGGGACTTGCTGGGGGCCATGAAGTATTGGAAAAGGGCAATGGAGATGAGGCATGGAGACAAGGGCTGTGTCATCTCCAAGCCACAGCCTGGGCCGCCAGTTTTGGCATACGACTACTCCCATGAGGTGACTACCAGTGAGGAGCTGGAGGCCCTGATCACCGACCCCGACGAGATGCGCATGCAGGCACTGCTGATCCGCGAGCGCATCCTGGGGCCCTCACACCCCGACACTTCTTACTACATCCGCTACCGGGGGGCAGTGTATGCTGACTCGGGCAACTTCGAGCGCTGCATCAACCTGTGGAAGTACGCACTAGACATGCAGCAGAGCAACCTGGACCCGCTTAGCCCCATGACGGCCAGCAGCTTCCTGTCCTTCGCTGAGCTCTTTTCCTTTGTGCTGAAGGACCGTGCCAAGGGCACCCTGGCCACCCGTGTCACCTTCGCTGACCTCATGGGCATCCTGTGCAAGAGCGTGCGGGAGGTGGAAAGAGCCATCGCCCAGCAAGACAACCCACCAGAGGTACCCCAGTTCACCAAGGCCCTCTCCATTATCCTACACTTGATCTACCTGCTGGAGAAAGTGGACTGCAGTGCCGAGCAGGAGCACCAGAAGAAGCAGACGATCTACCGGCTGCTCAAACTCAACCCCCGGGCTCGCAATGGATACACCCCGCTGCACATGGCCGTGGACAAGGACACCACCACCGTGGGGCGCTACCCTGTGGGCAAGTTCCCCTCACTGCAAGTGGCCCTTCTGCTCTTCGAGTGCGGGGCAGACGTGGACTCACGCGACTTTGACAACAACACCCCCCTGCACGTGTCGGCCATCAATGGCAGCCCCGAGATCATGAGCATGCTCATCGAGGCAGGCGCCCACTTTGATGCCACCAACTCCCAGCGCAAGACAGCCTACGAGCTGCTGGACGAGAAGGCCAAAGCCAAGAACACCGTGCACCCTCTCAATCATGTCACCCTGCAGTGCCTTGCCGCCCGAGCTGTGGAAAAACACGCAGTCCCTTACAAGGGGCTCATCCCTGAAGAGATGGAGCCCTTCATTGAGCTGCACtaa

Function

NR:

description
PREDICTED: protein fem-1 homolog A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006200 True 1851 mRNA 0.58 1 19449208 19451058

Neighbor

gene id symbol gene type direction distance location
AMCG00006185 sin3b,LOC106933771 coding upstream 68421 19349915 ~ 19380787 (+)
AMCG00006186 NA coding upstream 103000 19289399 ~ 19346208 (+)
AMCG00006183 NA coding upstream 220642 19205774 ~ 19228566 (+)
AMCG00006167 NA coding upstream 436877 19010848 ~ 19012331 (+)
AMCG00006168 NA coding upstream 447652 19000774 ~ 19001556 (+)
AMCG00006178 uhrf1,LOC106613510 coding downstream 22239 19473297 ~ 19492763 (+)
AMCG00006181 kdm4b,LOC101065945,LOC106519213,LOC108234360,LOC106937923 coding downstream 72681 19523739 ~ 19539686 (+)
AMCG00006182 NA coding downstream 149755 19600813 ~ 19611165 (+)
AMCG00006180 NA coding downstream 197548 19648606 ~ 19681766 (+)
AMCG00006179 NA coding downstream 249705 19700763 ~ 19702298 (+)
G156933 NA non-coding upstream 47804 19401014 ~ 19401404 (+)
G156930 NA non-coding upstream 54180 19394816 ~ 19395028 (+)
G156928 NA non-coding upstream 58988 19389963 ~ 19390220 (+)
G156868 elavl1,LOC105889513 non-coding upstream 207364 19238192 ~ 19241844 (+)
G156869 NA non-coding upstream 228930 19219804 ~ 19220278 (+)
G157009 NA non-coding downstream 772276 20223334 ~ 20223613 (+)
G157010 NA non-coding downstream 777528 20228586 ~ 20229103 (+)
G157014 NA non-coding downstream 836573 20287631 ~ 20287969 (+)
G157034 NA non-coding downstream 957460 20408518 ~ 20408775 (+)
G157056 NA non-coding downstream 1173015 20624073 ~ 20744205 (+)
AMCG00006174 NA other upstream 969121 18478128 ~ 18480087 (+)
AMCG00006138 NA other upstream 1092619 18190224 ~ 18356589 (+)
G156640 NA other upstream 1468571 17973741 ~ 17980637 (+)
AMCG00006190 LOC107695212,LOC107676806 other upstream 1684980 17746133 ~ 17764228 (+)
AMCG00006188 adamts10,LOC106584371,LOC108439663 other upstream 1714124 17662190 ~ 17735084 (+)

Expression


Co-expression Network