G152071


Basic Information

Item Value
gene id G152071
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 998354 ~ 1009739 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191479
aaaatattgtgtggTTACAGTTTTATGGCGCTCTAGACAGCTGTAAGATAAACCCCTGGAATAGAGAGTCCTTCTGGTACTTAAAGCAGAGGAAACTGCATTTCCGTTGATAGCAACCGTTTGCAAAGTGAAGTACGGCTTTGATTTCTTCAGTGACTTGTTATATTTCCACAACTGCAGGGGCAGTGGGCACGgggacacacagGGGACACACAGAGGTACGCACTGGGACACAAGgagacgcacagacacagagggacacacagggaCTCAAGGGGACATACAGAGGTACACACTGGGACACaaggagacacacagacacacagggacacagacacCTCTGAAACCAGCACGGCCATCTACTGAACCGCAGCGCTCACAATCACAGCACCGCCCACCACGACACGGCACCTACAGAACACCGGCTCGGACACGCGTCCCCCCGTCACACGAGCCGTTTCAGAacagattcttttttttaatgttttttcttcttttcttataagagagataaaataataaaaatatacatttacaattatacgATGGCACAGACGCTGAATAAACAGCCCTAACAGCTACTGTAAATAGTGGTGTACGGAGTGGTTACACAAACACGAACGAGTGGACTGACGCTTCAAGGAACCGCTTCGTCCCCCCGGCTCCTGTGGCCCCGCGCCGGCCcctcaccaccccccccccacggGCTCTTCACCGCTCGGCGGTCCTGGAATCAAAAGCCTCTCTCTGTTTTGGCATGAAGGGTTTACCAGTGCGAGAAATAACCATCAAGGCAGAGAGGAGCAGGTGAAGGCAGAGCTGCATGGGGGGGAATCAGGGGCGGAGCCGGGGGGGTCCGCGGCTCACACTCACAAGAACTTCTCTCGCATGAAACATCGGTGCCTCGGCTCGAGGAAATggaaggaggaaaacaaaggtACAATAagaacatgttaaaaaaatgaaaacaaaacaaaaaacatctgtagTTTATTCGTTCACCCTGGGAGGTGGAGGGcacagcgggggggggggcgtcGCTCTTGGCAGATGGTTCTAGTTCTTCAGGACGGAATCGTACACCTGGTACACGTACTGGGACACCTCGGGGGCCCGGCACTTCAGCGAcaactgagacagagagagagagagagagagagggagatcaAAATCATACACTCTTCCAGGTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191479 True 1192 lncRNA 0.52 2 998354 1009739

Neighbor

gene id symbol gene type direction distance location
AMCG00005454 NA coding downstream 24635 971671 ~ 973719 (-)
AMCG00005388 NA coding downstream 125349 871157 ~ 873005 (-)
AMCG00005387 tmem132e coding downstream 597557 398920 ~ 400797 (-)
AMCG00005391 NA coding downstream 623342 350765 ~ 375012 (-)
AMCG00005395 lig3,LOC102796838,LOC107587693,LOC105924869 coding downstream 730664 260508 ~ 267690 (-)
AMCG00005474 NA coding upstream 4913 1014652 ~ 1021117 (-)
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding upstream 13296 1023035 ~ 1027249 (-)
AMCG00005475 porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088 coding upstream 26357 1036096 ~ 1051408 (-)
AMCG00005473 NA coding upstream 49514 1059253 ~ 1062795 (-)
AMCG00005389 NA coding upstream 99862 1109601 ~ 1111890 (-)
G151979 NA non-coding downstream 307412 690659 ~ 690942 (-)
G151972 NA non-coding downstream 620641 377355 ~ 377713 (-)
G151970 NA non-coding downstream 648032 346997 ~ 350322 (-)
G151957 NA non-coding downstream 666010 242154 ~ 332344 (-)
G151903 NA non-coding downstream 961959 35722 ~ 36395 (-)
G152085 NA non-coding upstream 55720 1065459 ~ 1070656 (-)
G152178 NA non-coding upstream 387602 1397341 ~ 1398392 (-)
G152197 NA non-coding upstream 448498 1458237 ~ 1458662 (-)
G152320 NA non-coding upstream 683010 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 736214 1745953 ~ 1752738 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 877807 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 898684 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 931321 62355 ~ 67033 (-)
G152133 NA other upstream 209588 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 361603 1371342 ~ 1376473 (-)
G152277 NA other upstream 496201 1505940 ~ 1507628 (-)
G152271 NA other upstream 512003 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 698944 1708683 ~ 1723500 (-)

Expression


Co-expression Network