G152085


Basic Information

Item Value
gene id G152085
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1065459 ~ 1070656 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191494
CATTACTCAAAgtcatctctccctctcaccgCAAACGCACCTTAATGATGCCGATCTGTTTGAAGTACGTCGCCACCTGGTCTGGGGATACATCCTCGCCCAGGCCCTGGACAAAGATTGTGTTGTTGTCCGAGTTGTCCTCGCCACCTATAGACACACAACACCCTGTGTGATTTACCATGCGGGCATTTGAGCTGGCGGGGGCTTGGCGTTTTACTGGGAAGAGATGGACACTTCGACCGGCCAATCGGTATGAAGCATCCAGCGTTTgaaaactggataggatccttggatcacttagttattaatggacaccaaacaagcaccatggggcgaatggcctcctctcgattggacaccgTCTCATGTTCTTATGCATGATAACTGGGATGTTAAGGGCACTGCACAGTCAGTTTAGGCAACGGGCTTCAATGCTTTACCAGATTAATAAAATTGTACAACAACCTCTGGAATACTAGACAAGCTCTCaaaggaggggaaaaacaaactgtgcaTCGTGTTTTACTTTAAACTTTACAAGAGGAAACCATTGAAAGCACCAGCCTGAAAATGGAGAATGTGCTAAGTGCAGTGGGACAGCCGGGCCGCACCTAGAACCTGCGGCTGAACCGAGGCGGACCCAGCTGTTCCACGACCCTGGGAACGGGCAGCTCACCTGACTCAGATTTCTGTCCGTAGTCTTTGGGGCCTGAAAGAGAGCACACAGGAAAGAGGGGCATGATGAGTGGGCAGAGACCAgcacacaaacagcacagctcCACCGCTCACCTACAGTTCCCATAAGTCTTTGCTAgtgttttaaacaatacatgaaGGTCAGTTTAAGGCATCTGTGCACCACTTGTTATAGAGCTGCAGCGTCTGCTAGACCCTTGCAAAGCCTGCGCAGTCTGGGAAGTCTAGTTAAAACCACCAAGTACCCTTCAGCTACAACAAGCTCCTTCTCCACGGCCATCAtccactttcttttcttttggggtgggggtgggttaCAATTCGTCATCTTCTGATCTCATCATGCAACAGTACCATTATGAAGCGTATTCAGTATTAATAGCTTTATGGTTTAAAGAAATAAGTGGAAGGAATCCCCAAGGGCATTAAACAGACGAACAAACACTATTGCAACAGGTGGGTGCCTTGCTCTGGGACGCAACAAGAAACTGGCGGCTTTTAAGAGCTGGTCTCTTTGATAATACAGAATTTCCACTGAAACAGGGCTGATGCTCATCACTTACCACCGAAATTTTTGAAGCCACCATGGTCCCCACCTCTGCAGAGGAAAAATTGAAGAAATGATGCTTCCCTTAATGTCACATGTGAGCTCGGGGCTCTGTTTCTGTGCTGCCTCTCTTATACATGGTGAATGAAACAGTGCTCCCAGAAGGATGGGCCAATTCTCTGAGCCTGTCTGGGTTTATCCAGCAGGAAGGCCCTGGGTCTACACTCTCGCAGAGCCTCTGGACTGATAGGGAGAGCTGGGACTTTATTAACCTCCAGAAACCTGCATTTATGCTGATTTGAAGTGACAAATCAGAACATAGAAGCAGGTAAGAGATGTAAATTTAAATCTCTGCATCTAGCAGCTAGCTCACTCAGACACTCCTCTTAAGGTGTAAGGTATGCAGCAGGTTACAAGATTGTCCTGGAAGGCtatagataaacacacacacactatcttcTCTTTTTGAATTGAATATACGAGCTTCTATAGCAGAGGTCGAAGTTTAATTTCATTCACTCTGAAACCTGTAGCATAAAATGTAGACCACGTTAACAGATAAAACATTGAAGTCCACGTAATAAGACAGTACACTCATGACACTAGGAAGGAACCAGATTAAGTGACAGCATTTGAATCCTCAGTTTTTActaggaagaaaataaaacccaattaaatgtctttattgaCACATTGTCACCCTTTTGTGCACAATTTGGACATGATTATAAATTGCAGTAAATTCATTAACTGTCTAAAGGGCTGTGGACATGGTTGATGGGATCTTGGACTTGATTATTCGTGCAACCTGCCTGTACAGTTCACTGTGCACACATCAATTAAGCCTAACATACATGAAGCATGTTTAGTGAAGGTCCAATCAGGAGTTGACCAATAACACCCATCTGTGCTTCAGGCCGACCGCTTCACCAATGAGGCACTGCTACACAATTTACAAAGAACCCCTTAGAGGTCTTGAAACATCACCGGCACAATCAAAGCGATTGAGGTTCACTCTACGAGGATTGTTCCCCATGAAATGTGTGCAGAACACGCAGGAGGCCTCCTGCATTCGTCCACACCTTGATAGACAATGTGTGCAGGTGGCAAATGATTGTATGAGGCAAACTGCACGGCATCCTTCCCAATTATTTTATACAGGGATGAATATGAAACCTCTGCCAACTCCAAAGTTGGAATTAATGTGAAAAGGATCTCGTGTCCAGACAGGTTTGCATTACTGATGGAGAGGAGGCTGTGTGGCCAGGAGAGTAAAAGGGAATGTCATGAATCTTGACAACCACTACTGGAAATGGGGGGTGCATTCAGAAGCAACTGTCCCCCCCCCAGATTTCCACAGGCATCTCTGTGCATGTCTGGTAGCTTGTAAGTGAATTTCCACCCCATTTAAACCAAAAACCTGAAATCGAGATGCAACACAAGGCTGGTTGAAGCCAAGTTTCATTGATCCCTATTGAAGTCCAGTATAATCCTGGGGGGCGCCGAGCACACTCGAGGGGAGTGGGGTCTGCCTCTATGCCCCAGCCAGGCCAGTACATCAGCAGACGGGTTCAAATTAACTTCTGCCCTTCCCTTCAAAAACAGTGGAGCCCCAAAACTTAACCCGCAACcccaatagtttattttaaaacccagTCGTCTTTACGGGTTGCAGAAATGCATACCCTCAAGAACACTTACAGGGACGTACTAGCCAAGCATCCATTAACCTGTGAGCTGGCAGGCACTGCGAGGTGTGGACCCCCCGAGCCCAATCCCACAAAGCCGAGAACAGGCTTGAGACCCCAGGGTGTGTTTATAAAGACTTGGGCTGACACTTTAGTTACTTGTCTTGCCAAACCAACGGAGGAGCGCACTGGGTGCCCAGCCTCAATCGGGTTACAGTGAGTAACGCACTATCCATCTTTGAGGAAGACAGGAGCACAGATGTCATTACTAACCAAACGGGACGAAGAACAATCTTTATAGGCACACTGGGTTGAATGCAATAGGAGAATGTACGGGTCAAAGATCTAAAATACAGAGACAAGGCCTCTCTGCGAGTGCACACGTCTGGaactatatttataaaaaaaaaaaaaaaaaaaaaaatctgggttGTTTTACACGTGACGCACATTACTGGTGGAGCAGCAGAGAAGCCCACATGGGCTACTGTAGGGCAGGCCTGAGGCGTTTCAATGggaaacaaaatccaaaaacaaaacctgtatcTGGGGATGGAGCAGGACACCACACTGGCACACGCTCTCCCACACAGAACTAAAAGCATCGACTGTCAAGTGAAAAGTCCTTTGCATTAAATTGGTGTCCATCGTCAAAATGCGACTCTGCCGATGCCATACATATACATTGGGTTCCATTTTGTCCGTTCAAAAGCCTGTCAGTGTCCCTGCGGCCCTCACTTTCTACAGCAACTCCAATAAGGAAGAGGGAgatgggggaaggggggggggaggcaCCCAGCTGTGTTGGAGAAGCTGATTGACTGAAATTTCCCCAAGTATTGAGTTCAAGGATCAATTGAATGCTAGCTTCCTGAAAATACATCAGAGTATGGCTAGGCGTTTGTGAACTTCCAAGACGACGCATCAAAGCAACAAGGGCTCTGTGGATATTGAGactaattttacatttctttcttatCTCAATCACTAGCACAATCTAGACTATCTGGCCTGCCGTTGTCCGCACCCCCCAGGGCACTGGGGTGCCACTGAGCTGTGTGGAGGACAAGGGTGACTTTTCCACATTGAGGCGTCGACACGCCAACAGTCACTGGAGCTCCAGGGTGTTTGCTAAACTGGTACAGTGTGACCCTCTATTGTCCCAGATTCTAAACTGGGGGGAGATGTAAAGGGGTGTGGCCGGGCTCCTGGGTTCGATTCAGCTTCCCGACACACAGCATGAGCagctcccagcatgcattgAGGACCGTGTGAAGCTGGTGAGGTACCTGTCAGGGCGAAGCGCTTTGCAACTTACCCCATACCAGATGAGGGGCCTCTTCCGTCCCGGTCATATCCGCCGCGCCCTCGGCTCCTGTACCCATCAGACTGGCCTGAGCTCCCATCCTCTCCCCCATACCTGTTCACACCGTGAGCAGCATCACCATCGTAGCCCCGGCTGGCGTAGCTGCGGTGCTGCGATCCTCCTGAGGGTGGTGCATGTGCTTCGTGGGCAGGCGGCTGGGCGTAGGATGCCGGGGGCTTCGATCCATACCTTCAATACATTCCAGTGTCAAAGCAGCAGATTGCAAGGTTACACAGTTGCAAATGAGACGTGTCTGGGTCTCGCACACAAACCGCTTTACCGATGTGCCAACCTCAACATCATCCAAAAACACGAGCGCTTGTGCAGAAGATATGACTACGGTGAAAGGATCTAAAAAGCTGGTGAAGGTCTCCATAGAGCTGACTGACTTTCATACAATGCCGTATTTCTTACCCTGTAGGAGGCTCAGCACTCGGCTGTCCGTAGGCATCATATGCTTGCTGTCCGTAACCCGCCTGGCTGCTGGGCTGTGCCGTCTGACTGAAACTTTCCGCTAATTGAACGAGCAGAGAAGACATGACCAGGATGAGCAGAAAGCTGGCAACAATAACTGAGGGGATTAAAAAAAGGTGGAGACTAGCATACCTGGCTGAGTGTTGCCGTAGCCCGATCCATAGCCTGCGTAGCTCTGACTATAGGAAGAGCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191494 True 4967 lncRNA 0.48 2 1065459 1070656

Neighbor

gene id symbol gene type direction distance location
AMCG00005473 NA coding downstream 2664 1059253 ~ 1062795 (-)
AMCG00005475 porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088 coding downstream 14051 1036096 ~ 1051408 (-)
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding downstream 38210 1023035 ~ 1027249 (-)
AMCG00005474 NA coding downstream 44342 1014652 ~ 1021117 (-)
AMCG00005454 NA coding downstream 91740 971671 ~ 973719 (-)
AMCG00005389 NA coding upstream 38945 1109601 ~ 1111890 (-)
AMCG00005417 NA coding upstream 228710 1299366 ~ 1300547 (-)
AMCG00005427 ppm1e,LOC102780278 coding upstream 361248 1431904 ~ 1436308 (-)
AMCG00005428 rad51c,LOC107691693 coding upstream 391576 1462232 ~ 1467875 (-)
AMCG00005426 NA coding upstream 409520 1480176 ~ 1485828 (-)
G152071 NA non-coding downstream 55720 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 374517 690659 ~ 690942 (-)
G151972 NA non-coding downstream 687746 377355 ~ 377713 (-)
G151970 NA non-coding downstream 715137 346997 ~ 350322 (-)
G151957 NA non-coding downstream 733115 242154 ~ 332344 (-)
G152178 NA non-coding upstream 326685 1397341 ~ 1398392 (-)
G152197 NA non-coding upstream 387581 1458237 ~ 1458662 (-)
G152320 NA non-coding upstream 622093 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 675297 1745953 ~ 1752738 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 870367 1941023 ~ 1946800 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 944912 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 965789 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 998426 62355 ~ 67033 (-)
G152133 NA other upstream 148671 1219327 ~ 1335440 (-)
AMCG00005419 NA other upstream 300686 1371342 ~ 1376473 (-)
G152277 NA other upstream 435284 1505940 ~ 1507628 (-)
G152271 NA other upstream 451086 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 638027 1708683 ~ 1723500 (-)

Expression


Co-expression Network