G152111


Basic Information

Item Value
gene id G152111
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1245031 ~ 1253959 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191523
gcgAGTGAGATTTTATAAgtctgtgtgggttttgtaTGTACCTGCGCACATTTAGCGTGCACAACTGCCACCCTTTCCGTGTTATAAGCTGTTTTATCGATCGATGGCTTCTTACAACGTAGCTGATTTTTAGATTTCTTTTATCGCCATATCTTAAAGACGTATGATAGATGATTTCAGTATAtatggatttctttttttttttttcgttttgcttatttataggtgctgtatttttaatttgatgtctcttatttttgtctgtttgttatgGAAGGGATTATAAGGGGgcaaattaccttttttttttttttttttttttagactgaTAGACTGCCGGCAGTATTGCGATATATTTACAAGATGTAGTTgtcatacatgtatattaatgaaTTCTGAAGATTATTTTGACAGTgtcatttatattgttttaagagaaaaaagaaacagctgatgatgatgatagcATTATATGGTGCATTCGCAGTTCATGATTTAATGTTACaggttttacttttcttttgtgcgtgtttctgttctttttctgtCCGCGTTAGAACTCATTTCAACGATATTTCAAGATGGCAGAAGTACAGAGCGCTTGATTGGACTCCAGTCGGATGTTGATAagtggttttgtttattgttttgaagtTGTCGGTTTagttcttctgtttttcctcctcctcacccCTTCGGAGACGACGTACTGTTTCCTGCATGCTGTGTGTATCTTTCTCGGAGACCGTCGTCTCTCTCTTACCAGTGGCGCCATCTTGCACCTGTCCGAGTGCGGCGTTCCGTTCGCTCCGCACCGCTGGGCTGCTGCCGTTTCGACTCCTTCggcttgtttttggtttgaacTAAACACTCCGTGTCAGAACCGAACAAgaaccaaacagaaaacaataatccTCATCAGAATAGCCTGCTGATCTGTAGCGGAGGCAGGGTCCGGTGTGTTGTGGCCAGTCGGTGCAGCCCGTGGGGGAACAGCGCAGTGCTGGGCAGGGCCACCTCAGTTTAGCTAACGTCTGACGCTGAACAAGTCTCCCTCGCATGCAACACCCAGAACCTGTTGCATACGGTCAGTCCAGACTGCAGACTTACTTTCTATCTGCAACCggccagggagagagggacagagatggatggatagatcgagagagagagagagagagagagggcgaggcCGAGGCCTTTGGATTTGCACATGGTTCCCGATCAGGCTGAGGTGAGTGGCGCTGCACAAGACTGTAAGCTGGGTTCTGTAAGCCGGAAACCATATACGTGGTTTATTAAATAATCCTCCGTTTTGCCGTACATGACAGAGATCTTCAGCGGTGACTCGGCCGAGCCGTGTCCATGTCCGTGGCGACCGATTCGATTCGGTTGCATGGTAAACACCAGTGATGCTCTGCAGAGCGGTGGTCCGAGGAGAGAGATGCTGAGCCGTACagagtttaaaacaaagctTTGGCTCGAGCGCAGCACTGTTGCAGAGACATCCCTCGGCCCCCCTCCCCATCGCTCAGTCCTCAGTGTCTTAACACGTGTCACCCACTCCATCTAGTTCACATGAACACATTCGAAATGAATTTttaggatttttgttttttagaaaatacttttttaaaatagCTGTTGTAAATAGGATGCGAATTGTTTATGTACTTTATGATGTTGTTTACTTACGGTGACTTGCACGTCTTTGGAAAAttgttttgagaaaataataacGACTCAGTCGAGATGCATGTCGGCACAACGCCCGGCCTCACCTCTCGCGGCTCACGGTGTTTCAAGCACAAGCGCTGCGGTCCACACCTCTGCTCCGAGAGgcaattttttaaatcatattctaGCTCGTTATGtatgcaaatattattttagacCACTGGCAGGTTATAGTTTAAGTTTTACATCCGTCTGAGTCTTTAATATCCCTGCCATGTTCAGTAGAGCTACTGATTGATAACTAGATGTATTGATCCCAGACGTCTGATTTCCCAGCACTTCCTCCCTGTCCAGGTCCAGAACCTCTCTCAGCTGCGGTTCTGGCTCTCAGGCACACGGGTCCCACCTCCCTGAGCCCGCGTGCAGAAGCCAACGCAAAGCACTTAATTAGCACTTAGTCCGAGTAGCTCGGTACCGGGCGCTACCTAGTTGGCATTTCCAACTCGGAGCCAGACGGGGGGGGTGACACAGCCTCTGGGAGAGCATGCCTTGACTCACGGTTGCAAACCGGACCCAACCACAGCCCACACCCTGGCCTGGCCCGGCCCGGAGGGCGATGTGCCTTTAAGCGCGTGGTTACAAACCCGCAGCACTTCCCCGCGGCCCGGCCCTCCCGTTTGCAAAGCAAGAGTAATGCAATTACTCCGGAGCGGAAGGGCCGAGCGCGGCATCGTCAAAACGAAGCACGACCCCGGAGTGAGCGTGGCCGGACCGGGCCCCTGCTCTGGGCGTCCAGCCGGCCGGGTCCTTTAAACACATTTGCCTTTCACACATTGGTTACAAACCAAAGCTCTCCCAGAGCCCTGAACTGCCCACCCCCTCTGCGCCACCACTCCTCCTGCCAGCCACGCCAAGATACCAGCCAGGGCTTCACAGGGCTTAGGGCCAGGGGTTCCCGAGGCCCCGTCCCCACAGGGCCACATGCTTCCGTTCCCCATTCTCACGCCTCCCAAACTGCGTCACTTTCGCACAGCGGTCGGCTGCGCATGCTCCAGAGAAAAGCAAATGAAGATCGGAGGGGAACAATGGCATGCTTGATTTTATTCAGAcggagggtgagggagagatgCACTCGTCTTTGTGTCCAGCGATCGTTCAGTTAAACACTTAAACAGTTTCTTAAAAGCACAATACATGAAAGTGGTTTGATTGTTGTAGGTTAGTTAACGCACACTGCACACCGCGGCAGTTCACCTCGCCCTGCGCAGGTAGTGTAGCCCTTCTGACTGACTGACGTTGCTCTTTCCAGTCTGtgtatcaatataaatatacaaatgatttttgttattgtttttttaatgccgTGTTTAAAAGTCCCATTATTCGAGTGAAGCACTTAAGCGGTCTGAGAGCGTGTTCTCCAGGCTGTGAAGTCAGCCATGTGCCTTGAAGCAATCCAGGCCTTGTGCAGTTTTGAGGTTGTTAATGGATTGCTCTTTAACTAATGCAGTAAGAGGGCTGAAGAACCTGCGTTTGGGGAGTTTAAACCGTTCCTTCCTTCAGCCCAGTTCCCCCAGCATGTCCGTGTCGGGCTCGTACTCAACATCCACAGTCTTGTGCAGTCGCTGCCACCTCTAGAGTCTGAGCTGAACCCCGTGTTCCTATCCGTGTGCAGGAGATCGAGAGGATCATGTACACGCCACGCCACTAGCAATGCCCGCCTCCAAAAACAACACCCGTGGCGAGTGCGAGTTTGGACACGTGTCTCTACAAACGATCACTAGCTGATGAGAGAGACCGAACCCAGAATCCTCAGGTCAGACTTGACATTCAGTGTCGACGATTTAAACTTCATTTGAGAAATTCAAACCAGTGGTGTTTTTGGGGAGCAGGTTTATTTGTGCGGGATGGTGCTAATCTAGGAGTCGGCCTGCAGATCTGCCAGTAAAAGTGAAGCCTCCTGGAGCCAGTCTGGTCAAAGAGCTTCTCTTGTCATTAGCATTGTAACTATTTattagtttgatttattttgtttaggtttgtttcacctttttttctttcaaagtagATCTATTAGTTAGGTGAAGGACAGGGCAGTGAGCGGCCCTGCGGCGCCGGGGCCCGGGGCCTCTGTGAGTCCGCAGGGCCGAGTCAGGTGACCAGTGCCAGGCGGGTCAGGCAGCCACTGTAGCCTTTTGTTCAGGGAGTCTCTCAGAGGAGAAGGATGTCACTCCCTGTCGTGGCATTGATCACAGCACACGGGTCTTCCAGTCGCTCTTCATCACTGACAcATGTGTGGTCACGTGTCTGTATCAGGGGAGAAGGAGGGGATTGGGTGCGAGTCCAGTGTGGATCCTGGGGAGGGAGGTTGAGTCCACCTCGGGTCCACCTCCGTCCCCAGCCGGCGGAGTTTGAGAGCTCCAGACCTCGACCCCCGCGTGGCCGGACACCTGGCGGGGCTTAGGCTGTGGTTTGGTTGTGATCAGAACTCTGCCTTCCGCTTGTGGGAAACCGAATTTATGCAAAACCCCGACATGCTCGCATCGGTAGGCAGAGACCGCCGCGTCTCTCGCCTCCGTGTCGTCCTCGCTGTTCTCACTCGCCAGGATTAACGGTCTCCGAAGCCGCTGCCCGGCGCACACCTTCCGCTGTGCGTCTGTCCTTCTCTGACTCACAGCTCATCGCTTCAGGGACGGGCTTTGGGCACTCTGGCCGACCCAGTACCAGAGGCATGCCGGCCCCCCAGTGTGCGTCTGATCCCTCTGTATCTGGATCATGGGAGCGGTTTGTTCCCAGTGCGTTCATTCCCGTTGCGGTTACCGTGTTGTGCTGCGAAGGATTGTCCGATGTTGGCGTTTCAGTCACTTCAGACCCACCATATTGTCCCTCGTTGCCGGTGCTCCTGCCCTCGTGCTGAGGGGCTCCGGGGGTCCGGGGGTGCCGTCAGTCAGGTGAATTACGGTCACACAGTGCTGTGGGGGGGTGCGTCGGCAGCCCAGCGTCCCTCACCAGCAGGAACTCATTCAGTATCACTTACATTTCTGCAATATCATGTGCAAGGACCAAATCGCCTGTGATTGACATGGAAACCTTGAAGTTTTATTAGTTAGAATAgtttgaagttgttttttttgtttttgttttttttatatatatctatatatctatatatatatacacacacactctatttTAAGATACATATGTAAAAGAACAATTTAAAGCATATCAACATTACCACCTCTAGAACGAGATGATATATTTGTGCGTTTTGTCTGTTGTACGGGGTTTGTCGTCTCGCGGAGGTCAGCGCTAGTCGCGTCTCTTGTGTCTCAGATTtgatttttaactttattttcgTCATTGCTGTGGCAGATATTTCACTGTATTGGTCCCTATTTTAGATGTGCACTCATCTGTAGTTGGTCTTAGAACGGGTCATGATGAAAAGTCATCTTATTACGAGTAGGGGGTAGCTCCTGTCGCTGTCCAGAAGCAAGCACCCAAAGTTACACTGGTTTATATACTAAAGGGCATTTTAGGCATTTTCACAATAAACCAACCAACACACTTTTCTCCGCATCGTTGGCTCTTGGGATTGCGATGATGGACGTTGTGTATCCATAGCTTCAGAAGGAAAGGTTTTCACTCTTGGACGAATCTTATTTGTGTGATCGATAGGCTTTTTTTGGACAAAATTTAGGATTTTGCCctttgcaaatatttttctatagAAATGACTCAAATTACTATAGAGATTCTATACAGTGTCATATACAAATGTACAGATAAAATATATCCTGCGAAAGAGTTTCTTCAAGTTGTTAAACGTTTCTacgggttgttgttttttgttttgggttttttcttGAAGTATTGAAGCTGTCTTGAGGGGCGGCGCCGGGCCGCGCTCGGGTCGCCCCCTCAGGGCTGGGAAACACCAGACAGGCTGTTCTCTGAGACTCGGGCGAAGTCCGCTCTTACACGATGAATTTCAGGACAGAAAACACGTTGAGAAAACGAGAGCTTGAACCCATTAACTTTGAACGCGGATTTGCATCCAGCCGCGTCCCACAGTTGTTTCTTCAAGCCTGGCTGGCTTCTCAAGGTCTTTCGAGTTGTTTTCCACAGGCGTTTGTTTTCCCCTCTGTCAGCGGCTGGAAGCAGCACGTGTGACGGCGGAGTCGGTGCCCCAGGCTGGCGTGTGCCCGTCCAGCGTTCAGCGCACGGCGGTTTGTCAACGCGATGCACTATGCTGTGGGGTTCAGGCCGGGGCTGGGGTTGCTGCTCTTCACGAGTTATCCAGGGAGGTTTATTTACAGAggggtttgttttttgcaggcagcggtgggtgggtgggtgtgtgtatgtttgtgtgtctgagagtgagtgtgagtgttgTCCACCCGCTCCACCCCCGCTGTCTGAGCGAATCGTTCATTTCACCTGAGCTGCTTGTGTTCCCGTGACTCCCGGTGGCTGTTTGGGTTTGTGTCTTGGAGGAGTGTTGACTCACCCGTCCGGCTCAGAGCTGAGACAGGGACTGTCCCTGTGGCCGCTGTCCCTGTGCTGGGGGACGGGTCCGCTGTGGCCATGAGGATGGCTGGCGCCGTGGGTTCGGGTGAGGTCGGCAAACCAACAAGAGCTCGATGTCTACCTGTCACTCCTAGGGGTTGGTTGGTTATCAGATACAGAAGGCAACACCACGGGGTAAAGATCCAGGACACGACTGTCCCACGTTGAGACGTTTTCATGCAATAAACGGTTGGctaaccccctcccccaatcTGTGTGCCCTCTGTGGCCCTTGTAGAGAGAAGTAAAGCACTCCTAGAGCCGGTTGAGCCACTGCTGCCGGCCTGCTGGCTTATCGACCCCTGCAGGCTCCAGATCACAGTGCGGGAGCaactcagcagcagcagcagcagcagggcggCAGTGTCGGCCGTCTGAACCCCGTCCCCACAGATGATCAGCTCAGCTTGTAGACCCGTATTGTCAAGGCCGATAACGGTTCCTCTGTTGCCAATTACAACAGTCAATTACACCCTCACTGCCCAGTGCTGCCCAGGCGtgcacaaactcacacacacacacacacacattcacatacacacagccagGTGGGGACATCAAGCACCCCCCACCTTCCCCACAATCTACAATATTTGTTTCCTCTGCTCGTGTGGACGGGGTTCTGACGTGCGGCACTGCGCTCTGCTTTCTTCCCCCGAGACACCACAGTGTCTTTATGCAGCCTGAGCAAAATTGCGCCCGCCAGTCAGTCAGGGTTAAGGGGAGCCCAGCAAGACTACAGCTCCCAGAGTgccttgctgctgctgccgccacCTTTGCTCGCTCTGAAGTGCCAATCTGTGGTCTGCAGGGATCTGGCCGACCCCTTCATCGTGCGAATTGGATTTGAATGCGTCTTGTTGTCTGTCCGCTCCCTGCTGTGGGGTTCGCTGAGCCCTGTCACTCACAGCTCACTGCCTGGTGCATCTCTGGTCTGTTGGGGAGCGTGGGGGGGACCCCTCCCACTAGTTCGGCACggtttgtttctttcaatttaactcgatttggttttgtttcactttatttgCTTTCCTCTCGGTTTGTCATTTTCTTGGCCGTGTCCTATTGGAAAGTCTTAGGCCTTTGTAGACGGTTGTTGTACCGCGATTTGCATCGGAGTTGTAACGAGCTGACCGCCACCGCTTTCACCTTTTATcactttactactactactactactactactactactactactactactataccAGATTTATAAGCCGTCTTTTTTCTAGAAGAATATTTTTCAGCTGATGACTTAGAGACAGGGACACTACTTTTATCAACGGTGAAATAAGGGGCCACGCTCGCTCACAACGGCAAAGTGACAGAGGTCTCCAGCCCTCCTGTAAAAGAATTGGCAGCCGAGACAGAGACCCATAGAAACGGGTGACCTGCCTGCCACTGACCGGCCCTTAATATCGGGTCCTCCGGGGCCCTCCACGTCCGGACCTCTTTCAGACACGAGTCCTGCGCTCACAGGGACAGCGGGGGCCCCAAGCGGCCCAGCGTTCTCCCAGTGAGCGATATTTAGCTGCTCAGCGTCAGCCAAGGACCTGAGTTTTATCGGTAGAATCCGGTGGAACAAGAttttataccaaaaaaaaacgAGAGAGATTTTGTCCACCTTTTTAAGCGCTACTTTTTAAAGACCCGTCTGCTTTTCTACCTGAGGGATGTTTTGGCGGACCGGGGGCCACCGTCGCTGCTGCCAATTCTTGCCCGGGTGGAGACCTCCGTTGTACAACTGTGGCTGCTAATGGGTTTCAACTTTtttgtgcaattttttttttctttccattttattttcctccttttatttaaagtgaagctcttgtgttttgttacCAAACTTCACATTGAAGTTTCCTACCCTGTTGTTACAGAAAACCCAGTCAACCAAAAAGTGTCTTTCCGAGCGAAAGCCGCACTTGAGCTGACCACGAGTTTCCATGCAGTTCACCTTCTTTCTGTCTGAAGCGCCGGCGTCCCGGGCCAGAGGACCTTCTCCTCGGGGGGCGGTGGGACGCTCAGgcgtgtgcgtctgtgtggCGACCCGGGCGCCGGGCAGGGCGGCTCCGCGGCCTCGAGAGCCGTAGTGCCGTTGGTCCTCCTGGGGTTTATTCAACTGTAAACCCCAGAACGGCAACTCGACTGAATCCCAGAGACGGCCGTTAGTCCGGCGAAGAACTCCGAGCTCCGGCGGAACGTTAGCCGGTGGGCCGGCGCGTCTCTCCTGGCCGAGCCGCCCGGCGCCGCTGCCCCCGTCTGAGCGGGTCGCCGTCTGTTTTATATCGCTCTAAGAGAGGCTGCCTGTTTGCTGTCCCTCCATCAACAGATCTTCTCTTTTCGTCCaggacagttattttgtttttaatctttttccagtttgttttgtttgttttctaacatGTTGTCTGTTGTGTGTTCTCAGCACTGTAAGACAGTCCCTATACAATATGGAGAAGCAATATCACTGTATGAAACtcacacaatgtattattattattattgttattattattattattattattattattattattattattattattattcactagCACCCTAGGTGTGATAATTGAAGTAAATAtcttttatacaaaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191523 True 8866 lncRNA 0.50 2 1245031 1253959

Neighbor

gene id symbol gene type direction distance location
AMCG00005410 NA coding upstream 156 1214157 ~ 1244875 (+)
AMCG00005390 NA coding upstream 154350 1083158 ~ 1090681 (+)
AMCG00005464 NA coding upstream 163613 1073052 ~ 1081418 (+)
AMCG00005466 NA coding upstream 172790 1063490 ~ 1072241 (+)
AMCG00005465 NA coding upstream 209000 1030879 ~ 1036031 (+)
AMCG00005411 cux1,LOC105006988 coding downstream 1083 1255042 ~ 1258125 (+)
AMCG00005415 LOC107573094,LOC107551239 coding downstream 30328 1284287 ~ 1295448 (+)
AMCG00005414 wbscr22 coding downstream 47078 1301037 ~ 1305072 (+)
AMCG00005412 NA coding downstream 67849 1321808 ~ 1322595 (+)
AMCG00005416 LOC108240947,LOC106533470 coding downstream 88801 1342760 ~ 1359523 (+)
G152053 NA non-coding upstream 187636 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 230651 1014078 ~ 1014380 (+)
G151978 NA non-coding upstream 554095 690659 ~ 690936 (+)
G151968 NA non-coding upstream 708339 535895 ~ 536692 (+)
G151964 NA non-coding upstream 884739 360093 ~ 360292 (+)
G152196 NA non-coding downstream 204195 1458154 ~ 1458747 (+)
G152198 NA non-coding downstream 207765 1461724 ~ 1461939 (+)
G152397 NA non-coding downstream 1001406 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1817991 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1929862 3183821 ~ 3186988 (+)
G151969 NA other upstream 707668 536751 ~ 537363 (+)
G151967 NA other upstream 845166 398925 ~ 399865 (+)
G152159 NA other downstream 113055 1367014 ~ 1367956 (+)
AMCG00005418 NA other downstream 122509 1376468 ~ 1379302 (+)
AMCG00005434 NA other downstream 255543 1509502 ~ 1517580 (+)
G152267 NA other downstream 492001 1745960 ~ 1748934 (+)
G152337 NA other downstream 545852 1799811 ~ 1803903 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G873496 NA non-coding NC_048574.1 CM023228.2 27657076 ~ 27657464 (+)
eurasian perch (Perca fluviatilis) G21304 NA non-coding NC_053113.1 CM020910.1 32986048 ~ 32991893 (-)
striped catfish (Pangasianodon hypophthalmus) G24463 NA non-coding NC_047596.1 CM018542.1 10143009 ~ 10143237 (+)
striped catfish (Pangasianodon hypophthalmus) G314404 NA non-coding NC_047615.1 CM018561.1 4517601 ~ 4527820 (+)