G152178


Basic Information

Item Value
gene id G152178
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1397341 ~ 1398392 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191612
CCTCACCTTCTTGTTGGCCATGCCGTCGATGAAGACGCGGCACTGCTTGAGGATCTCGCGTCCCGGCTTCAGGTTCTTCAGGAATTCCTGGAAGTCCCGGGACACGCGGTCCGTCTCCAGGCTTGCCTGCCGGCTGATGGACGGACTGGGCGTCTTGGCTTCCTGGCTCTCTGTGGGGGAACAAGGAGCGGCAGAGCTCAACCCCCTGCAGGACTGCGCCGAGGGTCTGGGCATGGGGGGCCGCGCTCACACACAGGGGGGACACGGCCTGAGTGAACTGGAGAGCTACGCCCCTGGAGCTAAGACCCCTGGAGACGGGCCGACTCGCAGGGCACTATAGAGGCGGAGGGTGATCTACTGTGGCaggggacagacagagggacagacaacACCCACCTCTCAGTCTGGTCACCAGCGCTGCACCGGCAAACGTGACAGGACGAAACCAAACAATGCGACAGTGAACAGGCGGCACACCACAGTGACAAACAGGACGAACCACACGGCATCCCAGCCACACACATCCCCCGCTCACCCGCCCAGCCCAGCACCATAACACGGCAATTGTTTTTtgtgacaaagtacaaaatcttaaaattaaattatgcacATCAATAACCAGATCCATGCAATTTCACAGAAACACTGGCAGTGCCTTCGTTATGTATAAttcagcacacacactgcaatcaCACACGCACTGCaatcacacgcacacgcactgcAAACACACTGCAATCACACatgcactgcaaacacacacgcacacgcactgcAAACACACTGCAATCACACACGCACTGCAAACACACTGCAATCACACAtgcactgcaaacacacacgcactgcaAACACACTGCAATCACACACGCACTGCAATCACACACTGCAAtcacacacgcgcacgcactgcaatcacacacacacgtgctgCAATCACACACTGCAAtcacacacgcgcacacgcacTGTAaccacacgcacacgcactggCAGTGCCTTTGTTATGTTTAATTCAGCACAC

Function

GO: NA

KEGG:

id description
ko04137 Mitophagy - animal

RNA

RNA id representative length rna type GC content exon number start site end site
TU191612 True 1024 lncRNA 0.56 2 1397341 1398392

Neighbor

gene id symbol gene type direction distance location
AMCG00005417 NA coding downstream 96794 1299366 ~ 1300547 (-)
AMCG00005389 NA coding downstream 285451 1109601 ~ 1111890 (-)
AMCG00005473 NA coding downstream 334546 1059253 ~ 1062795 (-)
AMCG00005475 porb,LOC107728227,LOC107598574,LOC107703971,LOC108424088 coding downstream 345933 1036096 ~ 1051408 (-)
AMCG00005476 mdh2,LOC106908802,LOC103136570 coding downstream 370092 1023035 ~ 1027249 (-)
AMCG00005427 ppm1e,LOC102780278 coding upstream 33512 1431904 ~ 1436308 (-)
AMCG00005428 rad51c,LOC107691693 coding upstream 63840 1462232 ~ 1467875 (-)
AMCG00005426 NA coding upstream 81784 1480176 ~ 1485828 (-)
AMCG00005440 NA coding upstream 119091 1517483 ~ 1523285 (-)
AMCG00005439 hip1,LOC102790400 coding upstream 125268 1523660 ~ 1536868 (-)
G152085 NA non-coding downstream 326685 1065459 ~ 1070656 (-)
G152071 NA non-coding downstream 387602 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 706399 690659 ~ 690942 (-)
G151972 NA non-coding downstream 1019628 377355 ~ 377713 (-)
G151970 NA non-coding downstream 1047019 346997 ~ 350322 (-)
G152197 NA non-coding upstream 59845 1458237 ~ 1458662 (-)
G152320 NA non-coding upstream 294357 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 347561 1745953 ~ 1752738 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 542631 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 769212 2167604 ~ 2175954 (-)
AMCG00005419 NA other downstream 20868 1371342 ~ 1376473 (-)
G152133 NA other downstream 61901 1219327 ~ 1335440 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 1276794 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 1297671 94352 ~ 99670 (-)
AMCG00005407 polr2j,LOC107587688 other downstream 1330308 62355 ~ 67033 (-)
G152277 NA other upstream 107548 1505940 ~ 1507628 (-)
G152271 NA other upstream 123350 1521742 ~ 1615497 (-)
AMCG00005461 eif4h other upstream 310291 1708683 ~ 1723500 (-)
AMCG00005532 NA other upstream 798962 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 1008133 2406525 ~ 2410247 (-)

Expression


Co-expression Network