G152267


Basic Information

Item Value
gene id G152267
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1745960 ~ 1748934 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191729
CATCAAATCAGATTTATTTCTTTAGTGGTGTCTGGATTCACAGATTGCCAtggcaaaaaagaaaactcttAGTATTAAGTTAGTTACAATAAGAATCCATTCTCTTTCTAACAAGAAATTCTTCAAATGGGCacactacaaacaaacaagcaaaactaaAACGAGAAAAAAAGTCTGAtagcataaaaagaaaatatcaaaaataaCAAGTGGCAAGAAGTATTTAAGGTTGTGATTCAGTCACATGGGTCCTGATACGAAGATGGGCCTCGGAAGAGATGGTCACCCCTGTGAAgatttttaaatggcaaaacaAGCTTGTAAGATAGAAAACActccgacacacacacataccaataaagcaaaaaagaataaatacattaattgataaACACACCacacttatttttcttccagtaaatgcataaaaaattgaatgagacaaaaaaaatctctacagggatattaatatgtaaaacacttttttaaaataattttatacaAGAATGGCTTAACGATAAAAGACATTCACAAGCTAATTTAAGGATACCAGTTAGACATGCAATGATTAGCTGTCTCATCCCCTTAGAAATGCCATGCTTTACATCTGTCTTCCGCATCAAGATCCCCGGAGTAAATGACAACCTTTCCACACTTCCTGCCATCTATTATTCTCTCCGAGTCGTggatattaaaaatagatttaaaaaggCACTGTATATGAATTTGGTTTATTGTCCAGAGTTCATATACAATCTGGACAACACAGCATTTTGCGTCTGTATCTTCAGTTCGTTTTCAACCTTTCACCTCCCCAGATGTGCTAGATTTCTCTTGATCGGCTTGGATGGCCTCtccattaatttgtattgtttttgtatgtcaGCCAATGGAAAACATCAGGCAAAACACAGAAGTCTAGCAAGCCTTACTGAATCTAGTCCTGGAGACTCCAGTGGCTTTTGGTTTTCTATGCAGTGAACTCCATATTTATTAACTGAACCCATCCTTTTTTATCACATTCCTCAACTGGCCTGGGCTCCAAACCTCTAGCTGTTGCACGGTTCCTTTCcctgcatatttaaatgtattactacaTGAGCCTGTAAGCAAACGGGCCGATACATTGTGGCTCAGAATATACTCACGGACAGATTACAAAGACTTTAAAACCTGGAGTTTTAACCGGGCAGGGCCATGCAGTCATTTTTCTGACTGTAGAAGTACTGGAACGTTGACCCAGTATTTCCTTTTAGATCCCGAATTTGCAGTGGCTACCTGTAAGTTTTTGGATCCCACAGAAGCATTgttataaacaatttattttacaagcatAAGCATTGATCACATGAGGGCCAATGGCATTTGAAATGGGGCAAAATCAAGTCATCGACAATATTTGAGCAAATGAAATACTTTGCATTGAGCCCAAGATCTACCTGCGACGAACAATCTCCCGTTCTGGATTCCAAAACGGAGAAAGAAAGGGTTAAGAGCTTAAGAGAAGTCTAAATGCAGTCTCATTAGTGCAGTTAAGGGTTCGGTTAAACAAGATGAAAACCATAAAACACTGGGGTTCCAAGCCCACACTGGGAAGCCTTGATCTATGCCACAGCGGTCTGAACAGCAGGATGGCACCACATCCAGAAACCGGATGTTTGTGAATACCACTTGCATCTCAGTCTAATAGAACTGATTGGTTGTCCATTAAAGGTTGCATGAAAACCCTGCGCAAGGAATGCACGAAGGTGGTGATAGTGCACAGGCCTGCTGTTGAGACACATATTCCCAAGCCACTCCCACCAGCACTCCCTTGCCCCGGCAGGACACAACTAAGAGGGCTGTGCTGAAAAGTGCTTGGGATATGGATACTTCTtagcccctctctccctccctaaTTCCACTCTCTCTGCTGACGTTCACCTAAACACTGGACACTCACTGGAGGCGGCTTCCTTCTAGAGTCACTTCTTTTTTTCCAAACCCCTTTTAATGACATAAATCTCAGGATGAATGTATTTCTCATTAAACCAACGACTACCTCCAGCTTTTAGGGAGAGTGGGATTGATGGTGTACTGCAATGGGCCCAGTGAGAACCGGTGGGACCGCATCCAACATACCAAGATATCGAAGAACAATACACGAGTTTCACATGCAAAGAGAAGGGTGTGTGGTTGTGCTATGACGACTTGTCCCGTTATCTCTACTGTTATTTTTTTGCCTATCTTTGGTCTACCCACATTTCAAGCTGGATTCGACATCTTTCAAATTCTTGTATTCATTTTCTGAAGTAAAAGCTAGCACACGCGCACAAATGTGTGAATCAGTGCATTTATAAAACTAAGACGGCTAGGAAAAACATTGGTGTGTTCGACTGTCACACACTTAAGTTcgaaagaaaaatggaaaaagtgaATGCCAACATGTAATCATACCCTGAGCTAAGGAAAAATGTAAGACTTATgaagaaataacaacaataacaccaacaacaacaacagtaataataataaaatcctgtAAGTTTCAATGGACAATGTTGATTACAAAGATATGCTGTCAGTGTCAATACTATGGACCAATGATTTTCAATCCATGCTCTGATGAGCTACAGTGCAGCAGTATCTAAGgttaaaaatcacacaaaagaTCTGAAAAAAGCTCCAACTAAGACTGATTATGTTAATGACTGATTCAGCCAGCCCAGGTGAAATGGAATTCAGAAGTTACAATGGCTCATTTTAAGCTTTCTTGGTTCCCTAGACCCTGACCGAGTCCTCGATAAATTCGGGTCTCCTCACTCAACTGGAGTTAAAGCACCAGGCCGGATTTGGAGTCGTGGAATCGAGACTATAGGACTCCAAGGAAAAGGTTTTGCTAAAATCAGTTGAATGGAGTGCCTGGAAGGATGATTAGCCTTTAGATCAAAAACCTTTATGGTAAAAGCTTAATGTGATACAGAACAATTATAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191729 True 2975 TUCP 0.40 1 1745960 1748934

Neighbor

gene id symbol gene type direction distance location
AMCG00005457 NA coding upstream 93 1740671 ~ 1745867 (+)
AMCG00005459 NA coding upstream 11891 1724009 ~ 1734069 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding upstream 48817 1692137 ~ 1697143 (+)
AMCG00005441 NA coding upstream 74599 1667718 ~ 1671361 (+)
AMCG00005442 NA coding upstream 132884 1598525 ~ 1613076 (+)
AMCG00005430 NA coding downstream 148943 1897877 ~ 1908710 (+)
AMCG00005487 NA coding downstream 267082 2016016 ~ 2043288 (+)
AMCG00005486 NA coding downstream 300114 2049048 ~ 2055591 (+)
AMCG00005456 NA coding downstream 334300 2083234 ~ 2089877 (+)
AMCG00005455 LOC106612657 coding downstream 350110 2099044 ~ 2120874 (+)
G152198 NA non-coding upstream 284021 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 287213 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 492001 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 688565 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 731580 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 506431 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1323016 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1434887 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1450398 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1511276 3260210 ~ 3260429 (+)
AMCG00005434 NA other upstream 228380 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 366658 1376468 ~ 1379302 (+)
G152159 NA other upstream 378004 1367014 ~ 1367956 (+)
G151969 NA other upstream 1208597 536751 ~ 537363 (+)
G151967 NA other upstream 1346095 398925 ~ 399865 (+)
G152337 NA other downstream 50877 1799811 ~ 1803903 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 180521 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 754976 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1096283 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 1517440 3266374 ~ 3270844 (+)

Expression


Co-expression Network