G152271


Basic Information

Item Value
gene id G152271
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1521742 ~ 1615497 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191734
AAGATCACTTAAACAATGAAGACTTATTTGGGAATCAAGCTACACAAAACTggactttatttattcatttatttgcagaaaagaTAAGAAATAGGCCAAAGGAGAGGCGGTTCAGTGTATTGTTTCCGTTGTAATATTCATTAGGTTGTTCCCATCATTAGGATTCTAAAAATCAGCTGTGCTGGTCactggggggccacagtgtccCCCTACCCAAAACAAACCTCTGCAGCAGCCCCAGGAATAGCAGGGTGGGGCTCAGATGAGTAAAATGCAGTTGAAGCCTCTTCTGAGAAACAGCAGGGTGTGTAAAATAAACGGTTTTCCAAGCCGCTGCACTGCAAAGAcctgcaacacaacaacactgcaGGAGTGCGCCGGTTGTGTAGTCTTggcctcccccccaccctcggCAGACTGGACCCAGAAGGGAAGAGGAGCAACAGACCATTACATCCAGAAGAACTGTGCTGCGGCTACAGCAGATGTTTTATAGATGTGGGaagaaaactttttttgaatatataaaaaaaaaaaggtttatttaacaGTTCGGCCATTATGTCAACAACTgaatatttagaaataaagaaaataacaacaaaaatagtcGTCTTGCGGTTCTAACAGAGATTCATCTCCAAGTGCTGTTTCTGTAGACCGGGGGCTCGGCTCGGGGGCGACTGGTCGCTTGaatggggaggtgggggagataataatacaaaacaataatacaggGTGTCGTCTCACACAGGGCAGCGCAGCTACGCTCTGGCAGGGGTGGCAGTGTCCAAGTGCTCTGTCCTTTCAGAAGCTCTCGGCTCATTTCTGGACTGTATGTCCCGGCTCTCCAGAGGCCGATGGCGAGACTCAACCCCCCCCTGCAGGACCGCAGCTGGACACCCCTGAGCAAGAGCCACATGGCAGGGTCTGGTCACTAGTCCACatacaactaaacaaaacacaatcctTGTCTAAGGAAGGCGCCTCCACATGGTGCCGCGAACAGCAGGGTGGGGGGCTGCGGCGAGAGGCCATCAGTGCGCACAGAGCACCCTGGGCTTGGAGATGCATCTGCACAGGGCCGTCACGTCAGAACCCCCCCCGCACAGTCTGCCCTCCAACGCTCACAACTTCGTggcaaaaaacaacatacacaaGTGAGCAAATGCACCAGTACAGCAGCACCACAAAACCACCAGATGATACAGGGCCTGCGCTGGGCGGCTGGGGTCGGGGAGAGGACAGGCTGGGGTGTCTGCGattcttattaatattcctccccccaccccccattgtGTGCCACTGATTGCATGAGCTATACAAAGTGCTCCAATACACATCTACACAGACCCACATCGCTGCCCGTCAGATCTCACTGACGGAGAagggaagaggaaaaaaaaaaaacatgaaggcGAGGGGgggcattttatattaaatgtaaattttctGTCCAAATGTTGAGCGCTGCAGGGCACAGCTGGAAAGTGCCTTTTAAACTGATCCCTGAGAACCAGGCGGATGAGACCGTCTGTGCTGCTATCCAAGGGGACAGATCGGACCCAGGGGCGTGCCAGCGGAACCAGGGGCTGGGACAGCCTGTGCACAGCAGGGACACTCATCGTCTCGGGGGGGGTGGGTGGATTACAATTTTGAAGAGCGTTTGACTGGAATGGGTCCAGACGGCCACTGATTCCTGTCAGCCCCGAGGATCTCAGAAGCTCCcataggggaaaaaataaaaataaaatggcaaggGGGGGGAAGGGGACTGGCTGGCACCAAACTGCCCAAATCAGAGCGCACTCCGCAGGGAGAGCCTGTCCCCACCCACACCGCCAACCCGGCACGGCCCTGGCCAGAGCGCTCACAGCTGGAGCCGAGAGACGGGACGCCGGAGTCTCACgcagcaaattaaaacaaaaagcaggagCACAATTCCTCACAGCTGCTCGTCCACACGGAGAGACAAAGACATCAATTAGGTCTGCTGGTGACGAGGGGAAACGGAAATTAACACGACAAATCAAGACTGGTTCAGTTCGACTTCACGCCGCCGATTCTCTGCGAGGTGACGgtgaattaaaacaatcataataaaaataatctctaAGAGCTCCGGAGGTTCTCCTCAGTGTCTCTCCGGCACCGCGCTCGCTATCTTGGTCAGGACAAAACCCAAAAGAACAGCTCACCAGTAATCACgttacaaatataaatcagttCTCCAACTTatgaacagaaaagaaaagaaaaaattacAATTGAGAATCCAGTCAGATAACGTCGAACAGAGGCGGAGAGGATCCCCCCCCACTAAACACAGCTGTGACCGAGCCCCTCGGCCGGGAGGCTCATTGGCAGCGTTTTTGCCTTTTCCGTTTGGAAAGTCGCTGGTCGGCCGCGTCGTCCTCCTCGCCGCTCTCCCCCCGAGCCCCTCTCTTGCTGTGCCGAGTTCTGCAGCTCTCTCggggctcctcctcctcctcctccccctcctgctgctgctgctcttcctcgctctcctcctcctcctcctcttcctcttggGGCGGCCTGCGTGTGGCCTGCCTCCTCTTGCCGCTGGCCTCCCGCTCGCTGTCGCTCTCCTGCTCTCGGTAATCCCTCGAGGCGGCCGCGGCTCGTTTGCTTTTCCGT
>TU191735
TGAAACAGTGTAatcatcacatttttatttaaaaccatttacatttttaatgacattataaTGAGCAGAGAATACATGACGCTGCTCGGGTCTGCACATtcattctcctcctcctcctcctcctcctcctcacccccCCCGACACAGTCCAACAGGAatgccattaaaacaaaacaaaaaaagtgaaccACACAGCCTGACCTACTAACATACACATCCAACGACAGAAGAGTCCCCTACAGCCCCGTCCTGCAGAATTCACACACCAGGCGACGCCAGCCGATCTCAGTTCGCTCTTACAAGCGCCCCACGCACCCCCAACTGCATACAAGACGACCGAACATCCGCCTCGGCCCCAGTTGCTTTACAACCTGCCTCGGCTTCTTCAGCCTTGGTCTCTACAGGAACccggggagggggggaaaaaaaaacaggatcaaATAAAATCCCATCTGAAATCTGTGACCAAGAAAAAGTACTTACAACAGGTTTAAACCCAGTCTTTACGGTGTGATTTGTCACCGGATCAGTCAAGTAACAAACGTGTCCCAGTAGTCTGAACCGCCCCCTTCGGTCTTCACTCTATAGGCGCCAGCTCAGTGTTTGGACCCGTCCTGCAAcacactcccactcccacacacacggacacacatcAGCGCACAGCCAGTCAGTTACACCTCACACCTTATTTACAAAACGAACCgcttacaaaataaagattaaaaacaaaaagagcttGCATTTGAAGGACTGGGATTGGAGACGCTCACACCTACATGTTAAAacgatgggggggggggagcaaaAGGTCTCCCACAACACACAGGCGGCGCTGAACTCATGACCCTGTGGCCCCTTGTGTAGGACCCCTCTCCCAGGCTGGGGAGGGGGTGACTGCCTGTCATCGGGGGGGAAAAGCCTCCCCTGGGGGGTAACAGCAGCCCGATCGATGTCAGGAGACCCCGTGTGGGAGCCGTGGGCGAGGACCTGTGCAGGCTGAGTCCCACACTGATGACATACATGTGACCGGGACGCCCATTTCAGAGTCCAGAGctgaacacacactcactcacatactAACACACACGGATGCTGGACTCCACTCACAGCAGTAGTTCAACACTGCAGACCAGAGCTCATTCACATTTGAAGAGTAGAACTTCtacaacaaccccccccacacatttATAAGGTCTCATCACCTcccttccccaccccccaccctcccgcACACCTCACACACCTCTACCAAAAGGTAAAAAGTTCTGCTAATTAGAAAAAGTCATTCTACCCCTTGTAAACACACATCGCACCTCGGTGAGCCAAGCTTGAAGGAACTCTAGAGAAGGCAAAACtgctttaatataaaaatagaggtttgtgttttttttttttgttttttttttattattattcaatcttGTGTCTGGTGAACAAAtcttaaataaagtgcatttatACCTGGA
>TU191737
AAGATCACTTAAACAATGAAGACTTATTTGGGAATCAAGCTACACAAAACTggactttatttattcatttatttgcagaaaagaTAAGAAATAGGCCAAAGGAGAGGCGGTTCAGTGTATTGTTTCCGTTGTAATATTCATTAGGTTGTTCCCATCATTAGGATTCTAAAAATCAGCTGTGCTGGTCactggggggccacagtgtccCCCTACCCAAAACAAACCTCTGCAGCAGCCCCAGGAATAGCAGGGTGGGGCTCAGATGAGTAAAATGCAGTTGAAGCCTCTTCTGAGAAACAGCAGGGTGTGTAAAATAAACGGTTTTCCAAGCCGCTGCACTGCAAAGAcctgcaacacaacaacactgcaGGAGTGCGCCGGTTGTGTAGTCTTggcctcccccccaccctcggCAGACTGGACCCAGAAGGGAAGAGGAGCAACAGACCATTACATCCAGAAGAACTGTGCTGCGGCTACAGCAGATGTTTTATAGATGTGGGaagaaaactttttttgaatatataaaaaaaaaaaggtttatttaacaGTTCGGCCATTATGTCAACAACTgaatatttagaaataaagaaaataacaacaaaaatagtcGTCTTGCGGTTCTAACAGAGATTCATCTCCAAGTGCTGTTTCTGTAGACCGGGGGCTCGGCTCGGGGGCGACTGGTCGCTTGaatggggaggtgggggagataataatacaaaacaataatacaggGTGTCGTCTCACACAGGGCAGCGCAGCTACGCTCTGGCAGGGGTGGCAGTGTCCAAGTGCTCTGTCCTTTCAGAAGCTCTCGGCTCATTTCTGGACTGTATGTCCCGGCTCTCCAGAGGCCGATGGCGAGACTCAACCCCCCCCTGCAGGACCGCAGCTGGACACCCCTGAGCAAGAGCCACATGGCAGGGTCTGGTCACTAGTCCACatacaactaaacaaaacacaatcctTGTCTAAGGAAGGCGCCTCCACATGGTGCCGCGAACAGCAGGGTGGGGGGCTGCGGCGAGAGGCCATCAGTGCGCACAGAGCACCCTGGGCTTGGAGATGCATCTGCACAGGGCCGTCACGTCAGAACCCCCCCCGCACAGTCTGCCCTCCAACGCTCACAACTTCGTggcaaaaaacaacatacacaaGTGAGCAAATGCACCAGTACAGCAGCACCACAAAACCACCAGATGATACAGGGCCTGCGCTGGGCGGCTGGGGTCGGGGAGAGGACAGGCTGGGGTGTCTGCGattcttattaatattcctccccccaccccccattgtGTGCCACTGATTGCATGAGCTATACAAAGTGCTCCAATACACATCTACACAGACCCACATCGCTGCCCGTCAGATCTCACTGACGGAGAagggaagaggaaaaaaaaaaaacatgaaggcGAGGGGgggcattttatattaaatgtaaattttctGTCCAAATGTTGAGCGCTGCAGGGCACAGCTGGAAAGTGCCTTTTAAACTGATCCCTGAGAACCAGGCGGATGAGACCGTCTGTGCTGCTATCCAAGGGGACAGATCGGACCCAGGGGCGTGCCAGCGGAACCAGGGGCTGGGACAGCCTGTGCACAGCAGGGACACTCATCGTCTCGGGGGGGGTGGGTGGATTACAATTTTGAAGAGCGTTTGACTGGAATGGGTCCAGACGGCCACTGATTCCTGTCAGCCCCGAGGATCTCAGAAGCTCCcataggggaaaaaataaaaataaaatggcaaggGGGGGGAAGGGGACTGGCTGGCACCAAACTGCCCAAATCAGAGCGCACTCCGCAGGGAGAGCCTGTCCCCACCCACACCGCCAACCCGGCACGGCCCTGGCCAGAGCGCTCACAGCTGGAGCCGAGAGACGGGACGCCGGAGTCTCACgcagcaaattaaaacaaaaagcaggagCACAATTCCTCACAGCTGCTCCCTCTCTTTCCACACAGCTGTgggggggggggagcaaaAGGTCTCCCACAACACACAGGCGGCGCTGAACTCATGACCCTGTGGCCCCTTGTGTAGGACCCCTCTCCCAGGCTGGGGAGGGGGTGACTGCCTGTCATCGGGGGGGAAAAGCCTCCCCTGGGGGGTAACAGCAGCCCGATCGATGTCAGGAGACCCCGTGTGGGAGCCGTGGGCGAGGACCTGTGCAGGCTGAGTCCCACACTGATGACATACATGTGACCGGGACGCCCATTTCAGAGTCCAGAGctgaacacacactcactcacatactAACACACACGGATGCTGGACTCCACTCACAGCAGTAGTTCAACACTGCAGACCAGAGCTCATTCACATTTGAAGAGTAGAACTTCtacaacaaccccccccacacatttATAAGGTCTCATCACCTcccttccccaccccccaccctcccgcACACCTCACACACCTCTACCAAAAGGTAAAAAGTTCTGCTAATTAGAAAAAGTCATTCTACCCCTTGTAAACACACATCGCACCTCGGTGAGCCAAGCTTGAAGGAACTCTAGAGAAGGCAAAACtgctttaatataaaaatagaggtttgtgtttttttttttgttttttttttgtgattttgtacCTTGTCTTGCCTGAATTAATCGTTGCCAATcatccctcacacacacacacacacacacacacaacccttaGACGCAGCCGGCGCCTCCCTCACTCCTCCCGCCCGGGGGCCGCACTGCGGGGGCCGAGCCGAGCCCAAGCGTTTAGTTCAAATATATTACAcgtataaaacaaatctgagataaaaaataatactactaaGATCACATCTTGGAGCTACCCCATCACCAACCAAACCGACCAAAAAGAAAACGTTCATCAGTCCTGTCAATCTCTCCCCCCCGCAGGTAAGCCAAGTCCGGCACTGAGAACATGCCGCCATTCACCACACCTTCCTCCAAGCCCCCCCTCACCGAGGCGCCCCAACACACACCCGCAATCAACAGCGTCCGAGACGACAGAGTGGTAACAAATACAGCAACTgcaatagtaacaataataataataaagatacagAGACAGGAGGGGGATCTGAGCGGCGGCAGACAGAACACAAGCGGGCCATGCGTGTTCAGCGGGCTTCCTGACGGCCCGAGACAGGGGCCGAGCACCTGCAGGTGTCCCCCTGCACACTGACGGGGGTTCCACGAGTCCAAGGCCGTCGGAGGGGGGCCACACCGAGCAGctgagccccccccccacacggCTGCCACCTTCCAGACCCCagccaagagaaaaaaaaaaaaaaaaaaaaaaatcggatAAATTGTCATTTACATACAAAGCTGGGCTGGAAGGGTTTTCCTTTATTAAAAGGTAACTAAAATCGATGTGCCTTGTAACCCCCTACCCCCACACACACGGAGGGGTAGTGTCTGGGAATATAGAGGTAGTCTAGAGCAGCAAAGCAAGCGCATTacaggagaggtggggggggggattagaGTTCTTAACTCATGTGCAGCGTGTCTCGCAGCTCCCACAcgtctcactcacacacacacgcaggggGGCACTGCACCGATGGCGGAGGCACCGAATCTCGgggaccccccccccaactctgATAACAGACAGGAAGCAGAGCCCCGAGGCCGGTCGCCTTCCTGAGGATTGTTCTGCTCCTGCACTCGTGTGCGTCTCTCCCGTTgccttgttttttccccccgttTAAATGAGGAAATTGAGCCCCTGCAGCACGGCTACTGAGACATCGATACAGCATTCAGAACGACCGGGCCAAGACCCGCGggtcaccacacacacacacaccctctcacTGTCCCTGTATCTACACCAGCaggggagagacagacaaagaacAAACGCACACAAATGAAGTGAAGGGAGAGCGACACACAGTGAGGGGCGGATATGTACAGAGTCCAGTCTGGGGTTTGGAATAGTCTGTTCAAGTAATCTGGTGTCCAGGcgctcccccccacccccccacccccccacccccaccactgCACAGGGTCCACGGGGGTGGGCTGCAGGGGGGCGGTGTGTTGGGGTCACAATGGAAATCCAACAGGGGGCGTAGCAGCTCAGTCCAGCGGGGCGGCTGTCCGTCCCACGCTTCCCCCCCAGTGCGCTCACTTCTTCCGTGTGTGCTGCCGCCGGGCCTGCAGCCGCTGCCGTGCCGAGGGCTTGGAGCCGGAGCCGATGGAGAAAGAGGCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191734 False 2661 TUCP 0.53 2 1612773 1615497
TU191735 False 1466 lncRNA 0.49 3 1521742 1570178
TU191737 True 4230 lncRNA 0.54 3 1567118 1615497

Neighbor

gene id symbol gene type direction distance location
AMCG00005426 NA coding downstream 35914 1480176 ~ 1485828 (-)
AMCG00005428 rad51c,LOC107691693 coding downstream 53867 1462232 ~ 1467875 (-)
AMCG00005427 ppm1e,LOC102780278 coding downstream 85434 1431904 ~ 1436308 (-)
AMCG00005417 NA coding downstream 221195 1299366 ~ 1300547 (-)
AMCG00005389 NA coding downstream 409852 1109601 ~ 1111890 (-)
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding upstream 20248 1635745 ~ 1637496 (-)
AMCG00005446 NA coding upstream 44530 1660027 ~ 1666365 (-)
AMCG00005447 LOC106580668 coding upstream 59747 1675244 ~ 1685460 (-)
AMCG00005460 NA coding upstream 81780 1697277 ~ 1707786 (-)
AMCG00005462 NA coding upstream 139416 1754913 ~ 1774451 (-)
G152197 NA non-coding downstream 63080 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 123350 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 451086 1065459 ~ 1070656 (-)
G152071 NA non-coding downstream 512003 998354 ~ 1009739 (-)
G151979 NA non-coding downstream 830800 690659 ~ 690942 (-)
G152320 NA non-coding upstream 77252 1692749 ~ 1693555 (-)
G152335 NA non-coding upstream 130456 1745953 ~ 1752738 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 325526 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 552107 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 679336 2294833 ~ 2318672 (-)
G152277 NA other downstream 14114 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 145269 1371342 ~ 1376473 (-)
G152133 NA other downstream 186302 1219327 ~ 1335440 (-)
AMCG00005400 doc2b,LOC105895337,LOC107681901 other downstream 1401195 108398 ~ 120547 (-)
AMCG00005399 NA other downstream 1422072 94352 ~ 99670 (-)
AMCG00005461 eif4h other upstream 93186 1708683 ~ 1723500 (-)
AMCG00005532 NA other upstream 581857 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 791028 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 1257009 2872506 ~ 2890448 (-)
G152645 NA other upstream 1456363 3071860 ~ 3090714 (-)

Expression


Co-expression Network