G152335


Basic Information

Item Value
gene id G152335
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1745953 ~ 1752738 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191821
AGAATACTAGATAGTTTTCAAGAGATTTTGGAAATAGATGGAACATATCATTAATTCGGTAGAGCCTAATTCAGGGCGCTTATGAACTCTTATAGAGGAGCTCTGTTGATTGATCTAGTGCACCTCATCACATTTAACccaattttatcatttttatagacattttaataatagatCGGTTCTTTTCtcttaagcaaaaaaaaaaaaagaatggtttgaaaatatttgaattgcctaaagcatatattattttattattattattattattattattattattattattattattattatgtattttcttcatggAACTCATTGTACTTGCAGTCACACCACTGCCAGGTTTTAAGGTAAAGAGAAATGCAGGTATTGAGTCGAATCCAAGCAAAAGACTTGTAGAACTGTAGGAGCctttcatggttttatttttttaccgaAAGTGGCGTAGACTTCACATTCACATTGAAAGTTCACCTTTTTCACGCCGCATGCAGGTCTTCATGTAACCTCACATGCATACTGCAGCATCTCTGTGTGCTTCTCTGCTATGCCAGGCATGGTGGCATTCTCACTTAAAGGGCTCGAATCCATTTATTAAATCCCATCACTCACTCGTCACGGTCTCAAAAATGACTATAATGTGACCGTTTTTGTCCCAAAATGGGCATTCTGGAGGGGAAATTGAAATAGTTAATTCATGTAAAACGTGTCATTTATGTCACTTGCTCTTCCTGAAAGTGCTGAATGCTTGATAGGCAGTGATCTTGAAACTCACCTTGCAAAGGCAGCTGTTTTACTTAAACAGCCCTTTAAAAGAAGCCTCAATTAAGAAAATACGACGGTGTatcctgcttttctttcttttgtttgctaGATTGCTAAGTGGACATTATATCGAGAACTATAAATTACTAGTGCACAGAATTGTAACAactatattattcttatttgaaatacagctctggaaaaaattaagagaccgcTGCATGTGTTTggataaaatgaacatttttgttttattctataaactactgacaacatttctcccaaattccaaataaaaatatgaatggaatggaacggctgccatacatgtggagatgctgatttaagaaacatttgcagtggtctctcaATTTtatccagagctgtatattattatCTAAAGTCTTGTATTTGTGCCTACAGATCCCCAAGGTCACGTTGTATGACCTATTTGGTACTTTCAACCAAAAATGTTGACCTGATACCAGTGCACATTACATTTATGAATGGCTTCAGTTTCCCTTCCAGAATGCACATTTTTGGGAATGATCTAAACATAGTTACAGATTTCAGGATCCTGGTTAAGTTGGATGGGTTTAGACAAGTCAAACATTAGTTCCAGGTTACAGGGACCGAATGCAAGTGAATCCACGACTCCCTGCCTGGACACACAATTACAGTAACTGAGGAATTCACAAAGTCGGAAGTGTGCACTAAATGAAGGGCTGGAATCATGGACGGATTAGTGTAATGATTTCTTAGTTTTTGACACCGAAAGGAGCATTTGCCTCTTTAGTTTTTGCGTGACACGGTCCTTCATGACATTTCATAGCGCTTTCCTGCATGATTTTACAGAAATCCCTGTAATGATTATGCAAGGCCAGGAATAAAAcccaattaatttcaaataagcGACACCGACCCAATTTCAGCCCCCGATTAGCGAGGTGCTTCCAAACACTGAAGAGGAGGGGATTAGATGAATCTGTCCGATAACTAGTGAATAGAGTTTGAGTTTGGTCAGATCATTAATTTTTTTGACCTGGAGATTAAAAGTGCGTCCCCTCACACCCTGCCCACCCGCCGTATACCCTTGAGACCCCCTCCTCCATATCTTGTTTGAAGCGGGTAGCGTGTGTGATCAGAAAATGGGGCAGGTGGGATTCCCAGGCCAGCAACTCGTATCTGGGGGAGAAAGAAGCACACAGTAGAGAGACTGGAGACCTTAAATGTTCCCCCGGAGGAGCGGGAAAAATAGATTCCCAGtcggagggggaggggaagctTGGGCACCTTGACATCCTAGACCACCCCGTCCCCCTCTCGACTCTTTGAGTTAAATTTTTTGGGTGGAATTTTTTCTATCTTGGCAAAGAAACAGTAGGTTAGGTATTTAgcaagtttgttttcttaacttCATCATTCAGGTTTATTCTCTTTAGGAAATGAAATGTAGAATTTATTCCGTGTGCTACAAAGCTGGAACCAACAACATAGGGTGTAAGATAATAAGTTGGggcagcttttattttttaatgtcttttttttttttgtaataggATATTTATCATCGTGAGCTTCAATggtaattttattgtttttgttgaaagAGACTCGGATAAAGACAGGACCTCTTTGTGGTCGATCTGTTGCAGTAGAGCTTGGACTGAGCACAAGGCTGAGTTTCGGGCGTCCGCTTCCTCCCAGCATGCTCTCTCTGACACATATCCCTGTCTTCTCAATAAAGAGGTAATATTCTATGCACTGAACTTGTCTCCTCCATTAATTTCAACTGTGAAGCAATAGGTCAGCAAAGTGGGAGTGGTACAATAAACCTTTTAcaccatgcatttatttattgtgattattattattattattgcatttctttattccAACATGTTTTTGGTAGGATAATTATCTGACATTCTGCGCTGCAGCACTGGAAAACGTGAATAAAAACCCACATTTGTGCATGAAGGAGAAATTGGGATAAACACTGAATTGGGGCGATGCATTTTTCTTAGGGAGTGTTGAAGCTGAACCTCCTTTCGTCGGATTTCCCGAGCTAGGGCTGTGTGGAACGTGCTTCTCTGACGCGGCAGTGTGTACCTTTGAGACTGTGCTTTGCTGCCTTGTCGTGGGTTCAGATTTTGTTATCTCAGGCCTTTGTGTTTTAACACTACGTAGTTGGTGGGGGCTCACTTCCTAACTTGTAGGTAGTGCCAAGCACGGTCAGTGGAGCTGCTATTGAATTCTGGGTAGCAGTGGGAACTCTGCACTGCACGTGCTCTGTGGGGGGAGTTTGCCAGGCCTTCATGCTTTATCAAAACAACGGCCTTGGTTTGGACACCGGGATCCGTAACTGGAGCGGCGTATACAGAGTGATGTAGGGTTGGTGTGCTGAGgtttattaataacattatcGACCCTCGGTGTGTTTACCAGCTTTGCTTAACCGTCACTTACTTACAAGGCCTTTTGATTAGCTctgcgtttttgttttgttccccaaTGTGTAGTGGATCGGCGATTCATTTACTGGGTCCCAAGTTCTTGCCGAAGATCCTAGAActgtattttcttaatgttgTCATTTTGCAACTCGGACACATCCCGATCTGAAATACGACGCTGTGTATGACTGGAATATCGGCGAAGTTGCCTTAAGTGACGAGCTTCGGGGGGTAGTATCGGGAAAGACTTTCAGTGCTGTACGGCTGCGATTTGACACAAGACACGCAGACTAGGGACTCatgtggggaagaaaaaatgtataagtgtcCAGATGCATATGGACGTTCTTCTTTGAGGCagagtgtaaaaataaatgttagatcttagatgtttttttttttttagttcttaaTGAataatcctgtgttttgttgttgcttgtgtgtatgtgacCTGGAGGGAGGGGATCCACTCCATACAGCCGCTCCCCAAACTGAAacggggagaaaaaaaaaaggaccaaTTACGAGTCCAATAATCTCAATCctaaattgtatattaaaatgtatattaaccTGCTATAATTGTTCTGTATCACATTAAGCTTTTACCATAAAGGTTTTTGATCTAAAGGCTAATCATCCTTCCAGGCACTCCATTCAACTGATTTTAGCAAAACCTTTTCCTTGGAGTCCTATAGTCTCGATTCCACGACTCCAAATCCGGCCTGGTGCTTTAACTCCAGTTGAGTGAGGAGACCCGAATTTATCGAGGACTCGGTCAGGGTCTAGGGAACCAAGAAAGCTTAAAATGAGCCATTGTAACTTCTGAATTCCATTTCACCTGGGCTGGCTGAATCAGTCATTAACATAATCAGTCTTAGTTGGAGCTTTTTTCAGAtcttttgtgtgatttttaacCTTAGATACTGCTGCACTGTAGCTCATCAGAGCATGGATTGAAAATCATTGGTCCATAGTATTGACACTGACAGCATATCTTTGTAATCAACATTGTCCATTGAAACTTacaggattttattattattactgttgttgttgttggtgttattgttgttatttcttcATAAGTCTTACATTTTTCCTTAGCTCAGGGTATGATTACATGTTGGCATtcactttttccatttttctttcgAACTTAAGTGTGTGACAGTCGAACACACCAATGTTTTTCCTAGCCGTCTTAGTTTTATAAATGCACTGATTCACACATTTGTGCGCGTGTGCTAGCTTTTACTTCAGAAAATGAATACAAGAATTTGAAAGATGTCGAATCCAGCTTGAAATGTGGGTAGACCAAAGATAGGCAAAAAAATAACAGTAGAGATAACGGGACAAGTCGTCATAGCACAACCACACACCCTTCTCTTTGCATGTGAAACTCGTGTATTGTTCTTCGATATCTTGGTATGTTGGATGCGGTCCCACCGGTTCTCACTGGGCCCATTGCAGTACACCATCAATCCCACTCTCCCTAAAAGCTGGAGGTAGTCGTTGGTTTAATGAGAAATACATTCATCCTGAGATTTATGTCATTAAAAGGGGTTTGGAAAAAAAGAAGTGACTCTAGAAGGAAGCCGCCTCCAGTGAGTGTCCAGTGTTTAGGTGAACGTCAGCAGAGAGAGTGGAAttagggagggagagaggggctaAGAAGTATCCATATCCCAAGCACTTTTCAGCACAGCCCTCTTAGTTGTGTCCTGCCGGGGCAAGGGAGTGCTGGTGGGAGTGGCTTGGGAATATGTGTCTCAACAGCAGGCCTGTGCACTATCACCACCTTCGTGCATTCCTTGCGCAGGGTTTTCATGCAACCTTTAATGGACAACCAATCAGTTCTATTAGACTGAGATGCAAGTGGTATTCACAAACATCCGGTTTCTGGATGTGGTGCCATCCTGCTGTTCAGACCGCTGTGGCATAGATCAAGGCTTCCCAGTGTGGGCTTGGAACCCCAGTGTTTTATGGTTTTCATCTTGTTTAACCGAACCCTTAACTGCACTAATGAGACTGCATTTAGACTTCTCTTAAGCTCTTAACCCTTTCTTTCTCCGTTTTGGAATCCAGAACGGGAGATTGTTCGTCGCAGGTAGATCTTGGGCTCAATGCAAAGTATTTCATTTGCTCAAATATTGTCGATGACTTGATTTTGCCCCATTTCAAATGCCATTGGCCCTCATGTGATCAATGCTTatgcttgtaaaataaattgtttataacAATGCTTCTGTGGGATCCAAAAACTTACAGGTAGCCACTGCAAATTCGGGATCTAAAAGGAAATACTGGGTCAACGTTCCAGTACTTCTACAGTCAGAAAAATGACTGCATGGCCCTGCCCGGTTAAAACTCCAGGTTTTAAAGTCTTTGTAATCTGTCCGTGAGTATATTCTGAGCCACAATGTATCGGCCCGTTTGCTTACAGGCTCAtgtagtaatacatttaaatatgcaggGAAAGGAACCGTGCAACAGCTAGAGGTTTGGAGCCCAGGCCAGTTGAGGAATGTGATAAAAAAGGATGGGTTCAGTTAATAAATATGGAGTTCACTGCATAGAAAACCAAAAGCCACTGGAGTCTCCAGGACTAGATTCAGTAAGGCTTGCTAGACTTCTGTGTTTTGCCTGATGTTTTCCATTGGCtgacatacaaaaacaatacaaattaatggaGAGGCCATCCAAGCCGATCAAGAGAAATCTAGCACATCTGGGGAGGTGAAAGGTTGAAAACGAACTGAAGATACAGACGCAAAATGCTGTGTTGTCCAGATTGTATATGAACTCTGGACAATAAACCAAATTCATATACAGTGcctttttaaatctatttttaatatccACGACTCGGAGAGAATAATAGATGGCAGGAAGTGTGGAAAGGTTGTCATTTACTCCGGGGATCTTGATGCGGAAGACAGATGTAAAGCATGGCATTTCTAAGGGGATGAGACAGCTAATCATTGCATGTCTAACTGGTATCCTTAAATTAGCTTGTGAATGTCTTTTATCGTTAAGCCATTCTtgtataaaattattttaaaaaagtgttttacatattaatatccctgtagagattttttttgtctcattcaattttttatgcatttactggaagaaaaataagtgtGGTGTGTttatcaattaatgtatttattcttttttgctttattggtatgtgtgtgtgtcggagTGTTTTCTATCTTACAAGCTtgttttgccatttaaaaatcTTCACAGGGGTGACCATCTCTTCCGAGGCCCATCTTCGTATCAGGACCCATGTGACTGAATCACAACCTTAAATACTTCTTGCCACTTGttatttttgatattttctttttatgctaTCAGACTTTTTTTCTCGTTttagttttgcttgtttgtttgtagtgtGCCCATTTGAAGAATTTCTTGTTAGAAAGAGAATGGATTCTTATTGTAACTAACTTAATACTaagagttttcttttttgccaTGGCAATCTGTGAATCCAGACACCACTAAAGAAATAAATCTGATTTGATGAATCCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191821 True 6786 lncRNA 0.40 1 1745953 1752738

Neighbor

gene id symbol gene type direction distance location
AMCG00005460 NA coding downstream 38167 1697277 ~ 1707786 (-)
AMCG00005447 LOC106580668 coding downstream 60493 1675244 ~ 1685460 (-)
AMCG00005446 NA coding downstream 79588 1660027 ~ 1666365 (-)
AMCG00005445 fzd9,LOC106567714,LOC106612580,LOC107713270,LOC107691950,LOC107709816 coding downstream 108457 1635745 ~ 1637496 (-)
AMCG00005438 NA coding downstream 171197 1570753 ~ 1574756 (-)
AMCG00005462 NA coding upstream 2175 1754913 ~ 1774451 (-)
AMCG00005420 NA coding upstream 50179 1802917 ~ 1808080 (-)
AMCG00005421 lrrc75a,LOC107585608,LOC107664947,LOC108278186,LOC106935686,LOC107690424,LOC107744770 coding upstream 86829 1839567 ~ 1857205 (-)
AMCG00005431 NA coding upstream 196483 1949221 ~ 1956060 (-)
AMCG00005488 NA coding upstream 305244 2057982 ~ 2059253 (-)
G152320 NA non-coding downstream 52398 1692749 ~ 1693555 (-)
G152197 NA non-coding downstream 287291 1458237 ~ 1458662 (-)
G152178 NA non-coding downstream 347561 1397341 ~ 1398392 (-)
G152085 NA non-coding downstream 675297 1065459 ~ 1070656 (-)
G152071 NA non-coding downstream 736214 998354 ~ 1009739 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding upstream 188285 1941023 ~ 1946800 (-)
G152424 NA non-coding upstream 414866 2167604 ~ 2175954 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding upstream 542095 2294833 ~ 2318672 (-)
G152473 NA non-coding upstream 662334 2415072 ~ 2445097 (-)
G152652 NA non-coding upstream 1407319 3160057 ~ 3160364 (-)
AMCG00005461 eif4h other downstream 22453 1708683 ~ 1723500 (-)
G152271 NA other downstream 130456 1521742 ~ 1615497 (-)
G152277 NA other downstream 238325 1505940 ~ 1507628 (-)
AMCG00005419 NA other downstream 369480 1371342 ~ 1376473 (-)
G152133 NA other downstream 410513 1219327 ~ 1335440 (-)
AMCG00005532 NA other upstream 444616 2197354 ~ 2329684 (-)
AMCG00005517 NA other upstream 653787 2406525 ~ 2410247 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 1119768 2872506 ~ 2890448 (-)
G152645 NA other upstream 1319122 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 1854223 3606961 ~ 3632712 (-)

Expression


Co-expression Network