G152337


Basic Information

Item Value
gene id G152337
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 1799811 ~ 1803903 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU191823
TTCCACTTGTACATTTGATAACGGTTAATTACTTTCCTTCgttaatttgcattttcctttgttcTGAAATGGACCAAGCTGCTCGGAGACCTGCCAGCCTTCCTTCACCAGACAGCCTGACCAATCCAGTCAACCTTTTAATTGATCTCCACCCCCCCTCAGAAGCCAAGTTCAGAATATGCTTCCCCATGATATACATTTGGATAGGTTTATATTTCATTCTcttgaaaatattattacattaaaaatataaaatacacaagcaAGGTTTCGAGACTTCTAAAAACATGTTCACctcctaattaaaaaataaaataaaaaaatcctatGTGCAATGTGTTGTTTCATCTCATGTTCCTTGTTTTGTAGGTGTCGGCGTTCACAAAGTGGCAGTTTGGAGGATTTAGAAGTTCAGCTACACAACAGCCAGAACTCAAGTTGGAAGTGCGATGCTGGGAAGAGGTTTAAAGTCAAGGTTATAAACTTGTAACAATAACCAAAACAAGTCTTTATATAACAGGCTTTTGTAATGTGAATTGTCCGCTTTAACTGaattataaaactgtttttgttttgaataagaaaccatttttgttttctttctttttttggttggGGTCGTGGGGCTGCTGCAAATCCCCTCACAACTCCAGATAAACAACAGGTTTACCAACAGATGCCACAAATCCAGTCAACCCCCGAGAGTACAGTGGACTGGACTTCCAGGCCACAGAAAGAATAGGAATGTACCACGAGAGCAGCTATTGTAGGGGGTGACCATGACAGAGGGTTCAACCAGTACAAAACAGCAACCCTTTCTTGAAATTCATCAGTTCAAAAATccacttaataaaataacaaaacatattgctatacatttttaaaaaacagcattCCTTAGTCCATGCCAgcacaaaaactattttaatacttGCTGGTGAAGTGGTATCTGCACAACTATACTTTTAAGACCAGGGAAATAGTATATCTTCTTTATGAGGTGAATCAGTGGCAGGGGATGTGCAGGTGAGGGGGCTGTGACTGACAGTGTGTTCTCAGCCAGGATACTTAAAGTCAGTCGTGCAACACAACATCCATCTTCGGCAGACCTTGACTGACACCAAACACCAGCAAACAGCAAGACTCTGTCCAGACAGCATGATTAACAATCAGTACGCCTCTCTGCAGAGCAGCGCTAGCTTTCTCATTTCACCTCATTAGCCAGTCATACAGAGAGGGAGCATTCAAGACAGGCCAAAATGTCAGATTCACAGAGGTTTtcctatatttaaaattaagagGGAAGGAAACTCCTAACACAACAGCCAAGCCTGGAGAGTGGGCATCCCACTGTGTAAAAAACATCatcaaaataatgataaataggGAACAGcaatgtgcgtgtgtgtatagactgtatatatgcatacatacacacacacacacacgcacacatacagtatagaTGTGCAGATTCTATCTTCAAGCACCTGACCCACTCAGCCACCTAAATAAGCAGCAAACTTGCTACACCAGAGGTACAGTGTGTCTTTAAATCATCAGTTCTCCTAACATTGTAAGTGCTGTGTATCCAAAACGCAGTGAAGCTCTGTGAACAGTAGGGTTCCCACCTCTGATGGACAATAATTCTCGTAACACCATGTCTACAGAAAAAGGCCATAATGCACTTGTGTAAATATCACTTTAACCAGCATGGCAGTTCTCTCGGAGCATCCTTTATGTAGTACAGGCCTAATTTGCCAGTTAGGGGTGTATAAGGGGCAGTACGCATACTCATTTGAATCAAAGTATCATCCTTACAGCTTATCTTCTCACTTAAAACGATAGCAGAAAATCTCCAAAAACGATCCTCATGCGAAAGTATAATACACTGAAATCAGACAGCTGGTTTCATCATGAGAAAATCATTTACCAGTTTTGGGGAATCATGCGCTAAGTGTTGATATTACGCCCCACAAAATAGCACAACTGACCCACTTGAAAGAAAGGCAGCACATGCGCTACATGCTATATACACCTTTCCTCCTATAAATCTATTCACTTCTTATGTGACAGTCCCTGGGATAACCCCACTGTGGGACACCCCTTAGGGTCTTTGCACAATAATGCTGTATATGAGTGACAGGTTGGTTGATCAACACATTATATCCCTTCTATATCACAGCCTCAGAACCCCAAGTCATGGCTTGTGAAGTATAATGAAACGTTGGCTTTCCTTATTCCACAACCCTGTATTAGGATGCTCACGCTTCCTTGCACAGTGTATCATAATATTGTTGTTGGACTGACTTCTCAGAATATTCCCCCCATCTCCACTGAATGGACACTATGGGACTGCTGGACAACTTTAGAGCAAAGAAAGACTGTCTAATACTGAATACATGGACTCTATTGCCCACAGGGTTCAAATGGGCCTCCCAGCCGAAAGTAGAAGAGGACTTCTCTCCTCTTAGACACGCTACTCATGGAGCAGTTTGGTAACCAAGTTTGGCGTTACAGATCATTACACTGTGGACACCGGGTGAAATGGGGTCTAGCTTGAACTCGAGCGATGccctgttttctgtgtgttttttttttgcttcgtATAATGGAAAGATCTTTGTCAGGTAACAGGTAACAGACAATACAGCTTGTCAGAGAACGCGGCATTGGGGACCAGGCGCTCTCTGCTCTCAAGCAAAACTGGGCAGGAATGGAGTAACATAGCAAAGCTCAGAAGTGCCAGAGACGCAGCTCTCTGAATAAACAAGGGCTGtaacatttcacagaaaaacTCAGTTAGATTGTCCTTTTCTTGCAAACTTTGTGTAAGTTAACAAGGGCAAGTAGTGGCTGAAGAAGAAACACAGTTGAAGGCCACAACACGATAGCAAGAtgcctctcgctctctctttctcttgctctctcggTGAAGAGCTCTCTTCATGCCAGCCACAAGTGGGTAAACTGCCTGCCAGCCAAAAGGCAGGAAAAAACTGAGCTGCAGGACACCTTGAGGGGCTGGAGGGGTGGGAGCAGGGGGCGGTGGCCGATGTTCTCAAGTCTGATTGGCTGCCCTGGTCTCCACGTGATCCCCTGTCTCATCTGTCATTGACTGCTTAGGCAAGGGCTGAAGCTGGGATAGGCCGGAGTCGGGGGAGGGCGGCGCAGTGGGACAGctgtcctctccctccttctcttgcTCCTCCTCGGAGACCAAGTCGTCCAGGCTCTCTGAGAGATTGCCGTCGTGGCTGTCCAGGTCGCTCACCTGGCTCTCGCCGAACTCCAGGATGGTGGGCAGGTGGCCTTGTTTGGGGCAGCGCTTACGCAGGCTCACCAGGAAGGGCTGGGGCAGGCAGAAGATGTCCACGTTGTTGCCCAGGTCGATCCAGGTGACGCTGGGGAACTTCTCGGGGTCCTTGAGGGTGTCGGTGAGGTCGCGCAGCACAGCCTTGGTGAGCCGGTTGCCGTTGAGGGACAGCGTGTTGAGCAGGGGCAGGGCGCTCAAGGtgggcagcagctgcaggaagGCCTCGTCCGTCAGTTCGGTGAAACAGAGCTCAACGCTGGACACCCGGCCGGCGTTGCTCTGCAGGTACGAGCTCAGCCTCTCCATGTCCTTCGCGGTCAGTGGGATTCCTGACAGGTCCAGAGAGTTGTTGGGGGGACCACTGGACAAGACTGCTTTAAGACTGGATAggaaagagaaaggagagagagagagttgcaGGTGACATCATAATCAAGTAGCAGTTGTTTGGAGTCTGTCCGAAAAGTGAACATGTTCAcatttttaagtgttaaaaGTGATAACTGGATTCGACAGTGTAATACATTTGCTATACAATtgtaatctttaaaaatacaaacaggcAACACAATGTGCTTTGTATGGTGTTGTCATTTGTTTCAGTGAGGTGGATCCCAAAGTAGATTCTAACAGCTACTTCTGCTTCACATTAAGCACTCAAACGATTTCTCCTCCTGATCCAATGCAAAACTTACCCAAGCCAAGTTAAAAATAcctaacaataatacatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU191823 True 4048 TUCP 0.45 2 1799811 1803903

Neighbor

gene id symbol gene type direction distance location
AMCG00005457 NA coding upstream 53944 1740671 ~ 1745867 (+)
AMCG00005459 NA coding upstream 65742 1724009 ~ 1734069 (+)
AMCG00005458 rfc2,LOC107669364,LOC107561059 coding upstream 102668 1692137 ~ 1697143 (+)
AMCG00005441 NA coding upstream 128450 1667718 ~ 1671361 (+)
AMCG00005442 NA coding upstream 186735 1598525 ~ 1613076 (+)
AMCG00005430 NA coding downstream 93974 1897877 ~ 1908710 (+)
AMCG00005487 NA coding downstream 212113 2016016 ~ 2043288 (+)
AMCG00005486 NA coding downstream 245145 2049048 ~ 2055591 (+)
AMCG00005456 NA coding downstream 279331 2083234 ~ 2089877 (+)
AMCG00005455 LOC106612657 coding downstream 295141 2099044 ~ 2120874 (+)
G152198 NA non-coding upstream 337872 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 341064 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 545852 1245031 ~ 1253959 (+)
G152053 NA non-coding upstream 742416 1057185 ~ 1057395 (+)
G152040 NA non-coding upstream 785431 1014078 ~ 1014380 (+)
G152397 NA non-coding downstream 451462 2255365 ~ 2323345 (+)
G152644 NA non-coding downstream 1268047 3071950 ~ 3090655 (+)
G152655 NA non-coding downstream 1379918 3183821 ~ 3186988 (+)
G152656 NA non-coding downstream 1395429 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 1456307 3260210 ~ 3260429 (+)
G152267 NA other upstream 50877 1745960 ~ 1748934 (+)
AMCG00005434 NA other upstream 282231 1509502 ~ 1517580 (+)
AMCG00005418 NA other upstream 420509 1376468 ~ 1379302 (+)
G152159 NA other upstream 431855 1367014 ~ 1367956 (+)
G151969 NA other upstream 1262448 536751 ~ 537363 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other downstream 125552 1929455 ~ 1946800 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other downstream 700007 2503910 ~ 2510676 (+)
G152588 rpl23a other downstream 1041314 2845217 ~ 2849608 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 1462471 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 2478614 4282517 ~ 4305156 (+)

Expression


Co-expression Network