G152473


Basic Information

Item Value
gene id G152473
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 2415072 ~ 2445097 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192000
ATCTGCAGTGTGAATACAGGTACTATTTTATTGACAAAGACAGTTGTGATTACATGCATGGTGACAGGCATCCTTCCCTCCATTACAAACTAGaaattaagcattacaaaattaaaaattacaaccCAGGTAGCATTTAAGAAATCAAAAAAATCATTTACTTTTCCAAATGATATCTTTGAAATGTTGAAACGGCTGAAACCAAAATCTTTGCACCTTTTCTTTAGCAATGctagaaaataacaaataaaaataaacagcacctgaaaatgtacagaatttaTAAAGAAACAGACACCAtggttacaaaaatattttaaaatactttgctTAAAAAGTGCCATAGTGTTAAAGTTACAAAACATCATTCAGACTTGCTCCAAGACAGCCTTTTTCACTGTGACCACTGATATTGCCAGAACACAAGTCTCATAAATAAGAATCAGACAATTTTTTCCACACAATGCTCTAAATGATCTTTGCAGTAGAGTTTTTATTTCATCTTTAAATATTGCACACAGGGGGATAAGAATCATATTCCACTACAATGGCATACAGCAGTAAACCTAAAGCATTTGTGTTTGGAGTTATCACACGTAAAGTACTCAGACATGTGCTTTGTAACAGTTAACATCTCTCTTTTCAATTTCACGAACAGCAGTGTTAAGTAACAAGTACACCAGTACGTAAGTGATGTTACTAAACCCACGGGAGACAACACCATAAAGCATTGTGAGGCTACATTAAAACTGTGAACAGCCACGTTGAAGGGGGTGgaggaaaatgcaaattacCAGACTTGTTTCCACTTCTTGCACCCAAATGTTATGAGACACGGCACTGAGACACAATACAACTTATTCTGGGGTACAGCGCACTGCTCCACTTTAGGCTTAACAGCCCAGAAGACACTGAATGATAGTTGCCATTGTTTTGCGCcaaatttttaaataaattctctTGCAATTACCTGATACATGACTGTGAGATATGCGTTTATGTTCCACATCAATATCTCCAACAGTTCAGAGTTACTGGTCAGTGAAGACCTCCTAGCCACGAAATAAAGGGAGTGGATGAGAGTGAATCCCAGGTCCAGccaaatgcacacaaacaccaaCCATTTCggtttcttatatttttctaaCACTGCAGTCTTGGAACTGAAATTTTAGGAGACTTGATGTAGAGATTAGGAAGCTAGGTTTGCAACACAAGGTCTGAATTTCAATATTCAACCTTCGCTATGTCAAGAGGAGATATTGGACACGTTTGGCATTGAGGACAGAAGTGTCCATGTGGTTCTGGTGCttctactaaataaataattaggcatgtactgattgttttcattttactgaAATGCTTCggtgaataataaataaaaagactttATCAGAATGCAACCCCCTGAAAACAGGACTCTTCCAAGACCCTCTTATCAGGTCAGGTGACTAACAGtGATAGTGCCACACTGGGGTCCGGGGGTCACCGGGGTGGGCATGTTAATGTGCAGAACTAGTCCCTGCCAAGACTTCATGCAAGGAAAGAACGTAACACAGGGACTCCACCACGACCTTCCTCCTCTGTGTCACCCTCCATATTCACCTCACTCACTCTAGGCATGCGTTCTGTCTATAAAGGCTTGTAAACAGTGTTTGACCGATCAGAGCCTTGGTTAATATTTAAAGGAAGTTCTGATGCATGGTACCAAATCTGCAGACTATCTCGGGTTAATACTCACAATACCATCCCAGTCTCCAATTCTATGAAAACAAACCCCCATTTTCTCTAAAGCCCActaatactgtattttactgtgGTTTAATTTGGAATCACCCCAAAGCTGGACTAAACGAGAACTATTCGCCATctgggggaagaaaacaaaagaaatcaCAGCTGTGAGCCCTAGTACACTTTAACGAGCTATTTCTCAGGAGTCCGATACGAAGACTCCAAGGCCGACTAATGAGCTGTAAATCCCGGAGAGGAGTGGTGACTTCGCCCTCAAACTCTGGTACCGATCTCCCAAAACAGTATTAAGATTTGATCAAAGAATCAACatataaaattgtaaacaaaacagaaccaaaaacaaactgagaaaCATGTCCCCAGCAGTGAAATGTCTTGAACCCAGCCGATCCAGTACAATCCTGCAGTACAGACCCATTCCAAACGACAACACCAAGCGGTACTCTGATAGAGCGAGATATAGAGTCACTATGCGCACACTGCCTTCTGCATTTACACCAGcaaaggagagaagaaaaaaaaaaaagaatagaaaaatgGCAAGGGACATGCTTCTGCTCAGCATATTCACTCCCCATCCCATCCCACTTTCCCTTGAAATAAATCGACCAGCTGGTAGTACAGATTTCAGCATTAAATCACTGCCGGACTGACGGTCATAATTTCCACAGCCTTTCCTGAAGGCCACAGGATGGAgggagagctgtgtgtgtgtgtttgtgtgggggggggcatttAACTTTTTCCAGTGTGACAAATGTCTATCCAAAAAAAccactcttcctctctcacctcTCGTCCCCTCCACTAGGTCAGCTCCGGGCAGCCCCGATGCTGCGAGAGTCACTTCCGCCGGCTGAAGATGCTCTTCTTGCTGGAGCCCTTGTCTGCGGTGCTGAGGCCGATCAGCAGCCTGGCCTTCTCGTCCTCCTCTTGCTGCTGCAGGGTGGTGTCAGACTTGCCGTCCAGCGCCTTGCCCTTGGACTCCGATCCGGACGCCGGCTTCAGCCTCAACTTCTCTTTAATCATCTGTCGAGGGGGGAAGGGAGCACAGGTAAACCAATATTAG
>TU192001
ATCTGCAGTGTGAATACAGGTACTATTTTATTGACAAAGACAGTTGTGATTACATGCATGGTGACAGGCATCCTTCCCTCCATTACAAACTAGaaattaagcattacaaaattaaaaattacaaccCAGGTAGCATTTAAGAAATCAAAAAAATCATTTACTTTTCCAAATGATATCTTTGAAATGTTGAAACGGCTGAAACCAAAATCTTTGCACCTTTTCTTTAGCAATGctagaaaataacaaataaaaataaacagcacctgaaaatgtacagaatttaTAAAGAAACAGACACCAtggttacaaaaatattttaaaatactttgctTAAAAAGTGCCATAGTGTTAAAGTTACAAAACATCATTCAGACTTGCTCCAAGACAGCCTTTTTCACTGTGACCACTGATATTGCCAGAACACAAGTCTCATAAATAAGAATCAGACAATTTTTTCCACACAATGCTCTAAATGATCTTTGCAGTAGAGTTTTTATTTCATCTTTAAATATTGCACACAGGGGGATAAGAATCATATTCCACTACAATGGCATACAGCAGTAAACCTAAAGCATTTGTGTTTGGAGTTATCACACGTAAAGTACTCAGACATGTGCTTTGTAACAGTTAACATCTCTCTTTTCAATTTCACGAACAGCAGTGTTAAGTAACAAGTACACCAGTACGTAAGTGATGTTACTAAACCCACGGGAGACAACACCATAAAGCATTGTGAGGCTACATTAAAACTGTGAACAGCCACGTTGAAGGGGGTGgaggaaaatgcaaattacCAGACTTGTTTCCACTTCTTGCACCCAAATGTTATGAGACACGGCACTGAGACACAATACAACTTATTCTGGGGTACAGCGCACTGCTCCACTTTAGGCTTAACAGCCCAGAAGACACTGAATGATAGTTGCCATTGTTTTGCGCcaaatttttaaataaattctctTGCAATTACCTGATACATGACTGTGAGATATGCGTTTATGTTCCACATCAATATCTCCAACAGTTCAGAGTTACTGGTCAGTGAAGACCTCCTAGCCACGAAATAAAGGGAGTGGATGAGAGTGAATCCCAGGTCCAGccaaatgcacacaaacaccaaCCATTTCggtttcttatatttttctaaCACTGCAGTCTTGGAACTGAAATTTTAGGAGACTTGATGTAGAGATTAGGAAGCTAGGTTTGCAACACAAGGTCTGAATTTCAATATTCAACCTTCGCTATGTCAAGAGGAGATATTGGACACGTTTGGCATTGAGGACAGAAGTGTCCATGTGGTTCTGGTGCttctactaaataaataattaggcatgtactgattgttttcattttactgaAATGCTTCggtgaataataaataaaaagactttATCAGAATGCAACCCCCTGAAAACAGGACTCTTCCAAGACCCTCTTATCAGGTCAGGTGACTAACAGtGATAGTGCCACACTGGGGTCCGGGGGTCACCGGGGTGGGCATGTTAATGTGCAGAACTAGTCCCTGCCAAGACTTCATGCAAGGAAAGAACGTAACACAGGGACTCCACCACGACCTTCCTCCTCTGTGTCACCCTCCATATTCACCTCACTCACTCTAGGCATGCGTTCTGTCTATAAAGGCTTGTAAACAGTGTTTGACCGATCAGAGCCTTGGTTAATATTTAAAGGAAGTTCTGATGCATGGTACCAAATCTGCAGACTATCTCGGGTTAATACTCACAATACCATCCCAGTCTCCAATTCTATGAAAACAAACCCCCATTTTCTCTAAAGCCCActaatactgtattttactgtgGTTTAATTTGGAATCACCCCAAAGCTGGACTAAACGAGAACTATTCGCCATctgggggaagaaaacaaaagaaatcaCAGCTGTGAGCCCTAGTACACTTTAACGAGCTATTTCTCAGGAGTCCGATACGAAGACTCCAAGGCCGACTAATGAGCTGTAAATCCCGGAGAGGAGTGGTGACTTCGCCCTCAAACTCTGGTACCGATCTCCCAAAACAGTATTAAGATTTGATCAAAGAATCAACatataaaattgtaaacaaaacagaaccaaaaacaaactgagaaaCATGTCCCCAGCAGTGAAATGATTCTCAGTCTTTTATTCAGTGGGAAACAGTCAGCTTTTTGAAGGTTATACAGCACACGAGAGGTAGCCCCTTCGACATCATGTACAAGAGCTTTGCACTGATTTGAAGTAAATAATAGTTGCCTGGTGCCACACTTTATAGTAAAAGGCCTGTGGACTGATTAACTGTAAAGAGTAATCCTGTGTCAACTTCTGAGGAATGGGAATAAATCTCAACAGTCCTAACCCAAcccataataaattataataaaactcAGTGTCTCCAGAAGGTGACTTGGAGGAGGAGCCTggtggggagagaaagagggggaaagCAATGAAGAGAAGCCTACAGGATAGTTTTTGACAAGGAATGTTGTGGATCACTCTGGATCCTCCCTGCAGGTCCAGCAGAGCCTCCCAAGACCCGTCAGGAAAGTCCGTGTCCAGCCGCCCCCACCACAGCTTCAGGCTGAGGCCTTCTGCTTGTTGCGCTTGGCAAACCATTCATCGCTTTTGTCCGCGGTCATCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192000 True 2827 lncRNA 0.42 2 2442111 2445097
TU192001 False 2643 lncRNA 0.41 3 2415072 2445097

Neighbor

gene id symbol gene type direction distance location
AMCG00005519 mate4,slc47a2,LOC107599236,LOC107599264,LOC106604060 coding downstream 82176 2331855 ~ 2332896 (-)
AMCG00005520 LOC106604060,LOC107718056,LOC102197200,LOC101483717,LOC102785299,LOC106946208 coding downstream 93429 2308678 ~ 2321643 (-)
AMCG00005521 NA coding downstream 114218 2284444 ~ 2300854 (-)
AMCG00005533 NA coding downstream 192296 2217709 ~ 2222776 (-)
AMCG00005489 NA coding downstream 341776 2070365 ~ 2073296 (-)
AMCG00005485 NA coding upstream 139753 2584850 ~ 2585293 (-)
AMCG00005505 dusp14,LOC107672422,LOC107727911 coding upstream 205815 2650912 ~ 2651547 (-)
AMCG00005478 tada2a,LOC107661114,LOC106612794,LOC106581187 coding upstream 238540 2683637 ~ 2694104 (-)
AMCG00005477 traf4,LOC106581191 coding upstream 321449 2766546 ~ 2778432 (-)
AMCG00005496 nek8,LOC107672375 coding upstream 366129 2811226 ~ 2821222 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 96400 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 239118 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 468272 1941023 ~ 1946800 (-)
G152335 NA non-coding downstream 662334 1745953 ~ 1752738 (-)
G152320 NA non-coding downstream 721517 1692749 ~ 1693555 (-)
G152652 NA non-coding upstream 714960 3160057 ~ 3160364 (-)
G152661 NA non-coding upstream 738724 3183821 ~ 3184685 (-)
G152665 NA non-coding upstream 756088 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 861589 3306686 ~ 3308431 (-)
G152793 NA non-coding upstream 1253714 3698811 ~ 3725372 (-)
AMCG00005517 NA other downstream 4825 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 85388 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 691572 1708683 ~ 1723500 (-)
G152271 NA other downstream 799575 1521742 ~ 1615497 (-)
G152277 NA other downstream 907444 1505940 ~ 1507628 (-)
AMCG00005491 supt6h,LOC107603297 other upstream 427409 2872506 ~ 2890448 (-)
G152645 NA other upstream 626763 3071860 ~ 3090714 (-)
AMCG00005525 LOC106567758 other upstream 1161864 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 1405039 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 1839620 4284717 ~ 4292871 (-)

Expression


Co-expression Network