G152655


Basic Information

Item Value
gene id G152655
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3183821 ~ 3186988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192232
caaaacatttaataagtttcagagtatttaaatattcactGCTGTTAGCAATGTAGCATAGAGAACTACTTTTAATAATTAGGGGGGGGTCTTAATCATggcattttccttttaaaatggttaattgTTACATTATCGTTGGAAAGGAAATTTTAATCAGTCACttcaatatttgaattaaaggCTGAATCGTATTCAGTGCAGACTGGTCAGATGCAAACatctatattttagttttttggttttaaagtttttgtttttgcaaatcaGTCCTGGATTTCAGTATGGACAGAATATGTACTTCTAGGGTCTGGCTGCAGTGGTTTGGGATTTTGTGCCCAGTTTCAGGGTTTCACACTGATTTTCCTGCAGTCTCCTCCTTGTTcccatttgtattgttttttagttttcttttaattgttgGCAATTTCAGAGAGGGGGGGAATGTCATAAAGCTTCAATAACACTTCTTTTGCTGGGGTTCACCAATAGGTGTTTTACCCCCTGTGCAAGCATATTCTCATAGCCTGGTCATTGGTGGTGCTGTGCGCGAGCCCCCCATTAGGTTATGTTAAGCAAGGCACAGTTCCTGATCTGATTTAAATCGGGGTGTGTTTTTGAGGAGAATGCTACCTAAATGGATATTATTAAAGGAATGCTCACCCCCAAACAATCTTCTGCAATGTGAACTGTTTTCTTCTCCCCACCCCCATCCacagtgaggggggaaaaaaaaaactttagccATTTTGCATTGTGGGCTgtgctctttctttttttgttttttgtggcttACTGTCAGTGCCTCCTGTGACGgttatgggggtgggggtgcgaCACATTCTGAGAGGTCAAGATTTCACAGtgtagtgtttttatatatatatatatatatatatatatatatatatataatcaagaTTATATAAGGGGGGGGGAAAAATGTGCATATGAAAACCTAAACTACAAATCTCAATGCACAGCTGCTAAGCAAAGAATCGCCGGTGTAATAAAGAAACGCAAAAAAGTAGgctgtggattttttttgttttggtgccAAGTACATTTTTCTCTTCACATTCACAATGTCCATATTTTGCCTGTCTTCATTCTTATTGGCTTTGCAGCTCCGTAATGCATCTGATTTTATCATGTTTTTCAACCAAACGCATCTGCAGAATGTCAAGTTTGCACACGTTACTAAAATCGCAGAAGGCAATGGCAGTAagattttctttgcttttgtaaaatcatttgaatttgaaaagtCTTCAAGAGCAGAAGCATTCAGCTCAGTCTTGTGTTCGTTCTCCACAAATGCAAtggaatataaatgtattagtttttcttttctttatcatTAACATGTCCTGCAAGTTTCAAACCAATGTAACTCGATTCAAATGACCGTCaaattttaatctttattttgatttttgttcttgttcttgtcattaaaatgcttaagaattattttaaaatcacaccAGCTTGCGCttgtatagttttttt
>TU192233
GGGGAAAAATGTGCATATGAAAACCTAAACTACAAATCTCAATGCACAGCTGCTAAGCAAAGAATCGCCGGTGTAATAAAGAAACGCAAAAAAGTAGgctgtggattttttttgttttggtgccAAGTACATTTTTCTCTTCACATTCACAATGTCCATATTTTGCCTGTCTTCATTCTTATTGGCTTTGCAGCTCCGTAATGCATCTGATTTTATCATGTTTTTCAACCAAACGCATCTGCAGAATGTCAAGTTTGCACACGTTACTAAAATCGCAGAAGGCAATGGCAGTAagattttctttgcttttgtaaaatcatttgaatttgaaaagtCTTCAAGAGCAGAAGCATTCAGCTCAGTCTTGTGTTCGTTCTCCACAAATGCAAtggaatataaatgtattagtttttcttttctttatcatTAACATGTCCTGCAAGTTTCAAACCAATGTAACTCGATTCAAATGACCGTCaaattttaatctttattttgatttttgttcttgttcttgtcattaaaatgcttaagaattattttaaaatcacaccAGCTTGCGCttgtatagtttttttcttttttaatgggGGTTTGAGATCCATTTGACGAACATGAAACCttagggggggaggggggaaatgCAATATGGAATTGTAGTAATTTGAAGgtgttgcatatttattttcctttccgtTGGAGTGTTTACGGGGCACAGATTTGTAGGGGATACGGTGTTGTGAAATCTGATTTGTAAACcaaagctgctgctgctgctgcctggggATTGTATATGAGTCGGAGGCCTTTTTCTTCTGCGCTTTGCTTCTACACGTTCTGCTCAGTGTCTAAAAGTTATGAAACATCTGGATTTTGCACCTGCTTCAAAAACAGCCGGACAAAAAGTAACGCTCACTTTGGTAGTGGAGGCAAAATCCTTGTTGAAAAGCCTGCACACCCCCACAGAGAtgagagcttttttttttttttttttggtgcggTACGAAGGTTCAGCTGAAGTTGTAGtagaaaaaatacagatttcccCGTCTGATCTCTCTTCACATCTGCCCCTCCAGATCTCCAACGTTGTTTTCAGAAAATTGGCAGCAAGTGTTTGATCTGGGGTAAAACTCTTGGCGCATCGAAGCAGTTACTCCCCCAACAGGCTCCAACCATTGTGCATGAAGTTAGTTCAACAAAGCCAACGTGTTTCGAAAACTTTTGTTCGTTTCTCAATGTGGCAGCAATAAggaaaagaaactgaaggaaaaatcTAAAGCTTAATGACTCGGAACGGTGCATCGTTCTTGGCTCAGACCGCTCTCTTCCTATTGCAGGTTCTGCTCCATTTTGCTTCAAGACCATGAGCTAAACAATGGTGTCCATCTAGCCAAAGCAGAATCGGCTGCGATTCATATTCATGCACCCTAGAAAAAACAATCAAGGTTATTAATTTTCCTCGTATTTTGTCTCGTAAGTGCAAAGATGTCTCTGCGTTGAGCTTGTTGTCTGGAAATTCAGTTACTTAAGTCAAGCCAAGGAAGATGGTTGCCGATTAGATTCGGCAGCCCAGTTTCAAGCATAAATGAGGATTTTTTACGTTATAAGCAGCTAATACATGCTAGTGCTGGACCTCCGCATTTTCGAACCCTTTTGTATGTTAAGTGAACCAAGTGGCTTAAAAGACCTCAAAGGCAATGTGAGCTGACGAAGCTCCCGTGAGTCGGTGTAAGTCCAGTCGCCAAATAGCTGCTTGTGTGAAATCGGCCCATCTTGTGCTGTTTATCGACCTTATTTGCTTTTACATCGGTTCCGAAAAGAATACTAAGCTTGGTAAGAGAAAATTAGGCGTCTCGGGACTGTCACTAACGctcgtttttattttgttttatttttcttgaactaCAAAGGAAGGTTTGCAACATTTTCAGCAGACGCTTGGCGACTGCCAGgtcgtttttgttttctattattgtttgtgttggcAGGTGCAAGTTATGTGCACAGAAGATAGCGACTTTTCCTTTGGTTTcgagattttattttgtataggcCAGTCTTCAATCTTTACTGGCAAcagagagatttaaaaataaataaaaaataaacgcgtaaaacagaaaatctaggtttttcaattcttttttttaattttgtaaaaataatttctagcactttgcttttaaaagaaaaatggctTACAATGTCTGCAACCAGTGTCTcgaataaaa
>TU192234
GGGGAAAAATGTGCATATGAAAACCTAAACTACAAATCTCAATGCACAGCTGCTAAGCAAAGAATCGCCGGTGTAATAAAGAAACGCAAAAAAGTAGgctgtggattttttttgttttggtgccAAGTACATTTTTCTCTTCACATTCACAATGTCCATATTTTGCCTGTCTTCATTCTTATTGGCTTTGCAGCTCCGTAATGCATCTGATTTTATCATGTTTTTCAACCAAACGCATCTGCAGAATGTCAAGTTTGCACACGTTACTAAAATCGCAGAAGGCAATGGCAGTAagattttctttgcttttgtaaaatcatttgaatttgaaaagtCTTCAAGAGCAGAAGCATTCAGCTCAGTCTTGTGTTCGTTCTCCACAAATGCAAtggaatataaatgtattagtttttcttttctttatcatTAACATGTCCTGCAAGTTTCAAACCAATGTAACTCGATTCAAATGACCGTCaaattttaatctttattttgatttttgttcttgttcttgtcattaaaatgcttaagaattattttaaaatcacaccAGCTTGCGCttgtatagttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192232 False 1512 lncRNA 0.36 1 3183821 3185332
TU192233 True 2234 lncRNA 0.39 1 3184755 3186988
TU192234 False 578 lncRNA 0.34 1 3184755 3185332

Neighbor

gene id symbol gene type direction distance location
AMCG00005506 NA coding upstream 4141 3173579 ~ 3179680 (+)
AMCG00005509 NA coding upstream 11886 3151681 ~ 3171935 (+)
AMCG00005490 sdf2,LOC106602908 coding upstream 287152 2893305 ~ 2896669 (+)
AMCG00005492 NA coding upstream 311948 2866971 ~ 2871873 (+)
AMCG00005494 rab34,LOC108443499,LOC102306323,LOC102777300,LOC108278203 coding upstream 326709 2850092 ~ 2857112 (+)
AMCG00005507 nlk coding downstream 14513 3201501 ~ 3202760 (+)
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding downstream 42701 3229689 ~ 3256106 (+)
AMCG00005499 NA coding downstream 97882 3284870 ~ 3295314 (+)
AMCG00005500 NA coding downstream 117901 3304889 ~ 3306844 (+)
AMCG00005522 NA coding downstream 446745 3633733 ~ 3637811 (+)
G152644 NA non-coding upstream 93166 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 860476 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1721882 1461724 ~ 1461939 (+)
G152196 NA non-coding upstream 1725074 1458154 ~ 1458747 (+)
G152111 NA non-coding upstream 1929862 1245031 ~ 1253959 (+)
G152656 NA non-coding downstream 12344 3199332 ~ 3200187 (+)
G152657 NA non-coding downstream 73222 3260210 ~ 3260429 (+)
G152764 NA non-coding downstream 536925 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 1071878 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 1105042 4292030 ~ 4292882 (+)
G152588 rpl23a other upstream 334213 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 673145 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1237021 1929455 ~ 1946800 (+)
G152337 NA other upstream 1379918 1799811 ~ 1803903 (+)
G152267 NA other upstream 1434887 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 79386 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1095529 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1373225 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 2027825 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3247533 6434521 ~ 6437078 (+)

Expression


Co-expression Network