G152657


Basic Information

Item Value
gene id G152657
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3260210 ~ 3260429 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192236
TAGATTTACTAGATTTcttttataaacatgtttttcacattaattCCACAACTTGTTTGCAATCCTCAGCAGAAGATCTGAAATTGGCTATGTGGATATAAGTGTTTGATCTGGTTATCAGATGAGGAGGAAGCTGGGGGCAGAGATGGAGATTGATAGAAAGCAGCTGGGGAAACGAGAGTGGattcatttaaacaataatatatagatttagATGGAT

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse
ko04723 Retrograde endocannabinoid signaling
ko05032 Morphine addiction
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU192236 True 220 lncRNA 0.35 1 3260210 3260429

Neighbor

gene id symbol gene type direction distance location
AMCG00005508 nlk,nlk2,LOC107682651,LOC107756449,LOC107666197 coding upstream 4104 3229689 ~ 3256106 (+)
AMCG00005507 nlk coding upstream 57450 3201501 ~ 3202760 (+)
AMCG00005506 NA coding upstream 80530 3173579 ~ 3179680 (+)
AMCG00005509 NA coding upstream 88275 3151681 ~ 3171935 (+)
AMCG00005490 sdf2,LOC106602908 coding upstream 363541 2893305 ~ 2896669 (+)
AMCG00005499 NA coding downstream 24441 3284870 ~ 3295314 (+)
AMCG00005500 NA coding downstream 44460 3304889 ~ 3306844 (+)
AMCG00005522 NA coding downstream 373304 3633733 ~ 3637811 (+)
AMCG00005526 NA coding downstream 382460 3642889 ~ 3644121 (+)
AMCG00005523 NA coding downstream 388418 3648847 ~ 3652715 (+)
G152656 NA non-coding upstream 60023 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 73222 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 169555 3071950 ~ 3090655 (+)
G152397 NA non-coding upstream 936865 2255365 ~ 2323345 (+)
G152198 NA non-coding upstream 1798271 1461724 ~ 1461939 (+)
G152764 NA non-coding downstream 463484 3723913 ~ 3761827 (+)
G152866 NA non-coding downstream 998437 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 1031601 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 1271892 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 1930098 5190527 ~ 5190796 (+)
G152588 rpl23a other upstream 410602 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 749534 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 1313410 1929455 ~ 1946800 (+)
G152337 NA other upstream 1456307 1799811 ~ 1803903 (+)
G152267 NA other upstream 1511276 1745960 ~ 1748934 (+)
AMCG00005498 lyrm9,LOC102789908 other downstream 5945 3266374 ~ 3270844 (+)
AMCG00005538 NA other downstream 1022088 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 1299784 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 1954384 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 3174092 6434521 ~ 6437078 (+)

Expression


Co-expression Network