G152661


Basic Information

Item Value
gene id G152661
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3183821 ~ 3184685 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192240
CTGTGAAATCTTGACCTCTCAGAATGTGtcgcacccccacccccataacCGTCACAGGAGGCACTGACAGTaagccacaaaaaacaaaaaaagaaagagcacAGCCCACAATGCAAAATggctaaagttttttttttcccccctcactgtGGATGGGGGTGGGGAGAAGAAAACAGTTCACATTGCAGAAGATTGTTTGGGGGTGAGCATTCCTTTAATAATATCCATTTAGGTAGCATTCTCCTCAAAAACACACCCCGATTTAAATCAGATCAGGAACTGTGCCTTGCTTAACATAACCTAATGGGGGGCTCGCGCACAGCACCACCAATGACCAGGCTATGAGAATATGCTTGCACAGGGGGTAAAACACCTATTGGTGAACCCCAGCAAAAGAAGTGTTATTGAAGCTTTATGACATTCCCCCCCTCTCTGAAATTGCcaacaattaaaagaaaactaaaaaacaatacaaatgggAACAAGGAGGAGACTGCAGGAAAATCAGTGTGAAACCCTGAAACTGGGCACAAAATCCCAAACCACTGCAGCCAGACCCTAGAAGTACATATTCTGTCCATACTGAAATCCAGGACtgatttgcaaaaacaaaaactttaaaaccaaaaaactaaaatatagatGTTTGCATCTGACCAGTCTGCACTGAATACGATTCAGcctttaattcaaatattgaaGTGACTGATTAAAATTTCCTTTCCAACGATAATGTAAcaattaaccattttaaaaggaaaatgccATGATTAAGACCCCCCCCTAATTATTAAAAGTAGTTCTCTATGCTACATTGCTAACAGCagtgaatatttaaatactctgaaacttattaaatgttttg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192240 True 865 lncRNA 0.40 1 3183821 3184685

Neighbor

gene id symbol gene type direction distance location
AMCG00005480 NA coding downstream 31902 3151044 ~ 3151919 (-)
AMCG00005479 NA coding downstream 177975 2992417 ~ 3005846 (-)
AMCG00005495 zgc:174895,LOC105911024,LOC107580547 coding downstream 319840 2857277 ~ 2863981 (-)
AMCG00005496 nek8,LOC107672375 coding downstream 362599 2811226 ~ 2821222 (-)
AMCG00005477 traf4,LOC106581191 coding downstream 405389 2766546 ~ 2778432 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding upstream 165272 3349957 ~ 3365350 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding upstream 382152 3566837 ~ 3568504 (-)
AMCG00005524 NA coding upstream 398716 3583401 ~ 3604355 (-)
AMCG00005552 LOC106567758,LOC106603288 coding upstream 467950 3652635 ~ 3692107 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding upstream 623080 3807765 ~ 3821342 (-)
G152652 NA non-coding downstream 23457 3160057 ~ 3160364 (-)
G152473 NA non-coding downstream 738724 2415072 ~ 2445097 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 865149 2294833 ~ 2318672 (-)
G152424 NA non-coding downstream 1007867 2167604 ~ 2175954 (-)
G152344 ywhae,LOC105005922,LOC106567579 non-coding downstream 1237021 1941023 ~ 1946800 (-)
G152665 NA non-coding upstream 16500 3201185 ~ 3201687 (-)
G152736 NA non-coding upstream 122001 3306686 ~ 3308431 (-)
G152793 NA non-coding upstream 514126 3698811 ~ 3725372 (-)
G152798 NA non-coding upstream 529998 3714683 ~ 3718436 (-)
G152815 NA non-coding upstream 603523 3788208 ~ 3792444 (-)
G152645 NA other downstream 93107 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 293373 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 773574 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 854137 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 1460321 1708683 ~ 1723500 (-)
AMCG00005525 LOC106567758 other upstream 422276 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 665451 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 1100032 4284717 ~ 4292871 (-)
G153130 NA other upstream 2116084 5300769 ~ 5302198 (-)
G153342 NA other upstream 2896550 6081235 ~ 6082866 (-)

Expression


Co-expression Network