G152736


Basic Information

Item Value
gene id G152736
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3306686 ~ 3308431 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192325
atgtgtattatgtcTAGGACACAGATTAATTCCAGTCAGATTAGGGTTTAATAACACCGCTTCCTCCCACccaaaaaaacagatttcaaatcATTATCTTCATATTGAGTATGAACACAGTATTGCTGGGCTGCtgccttctctctttctttcttcacacTTGTTGGTCTTCTGCCAAGATTATCAGCGGCATAGCACTCCTCAATGAGGCTATACAGCTGGTATATCACCGTTCCATCAAGGCTGTTCCAGCACTTGTGAAATACAGCGTTACACCTAATGGAAATTCAACAGCACATGCACTCATCCTTTACTCCGTTCTTCAACTGTTTCTTGTGATTTACAAGGGGAAAGAATAGAtacataaagatatatataaacattacataACACATGACTTAGGATATTATTTTACTGACAATTTACAAGTGCAAATCATACAATTTGCTGCAGCATCATTTCGGCCGATAGTTCTCAGACATTTGTTCACGCACGGCTTTACAGCATTCCTGTTACGCCCGGCAACAGAAGCCGGTAAACATTGTGCATGGGCTCACAGAGAATTAAAGTAACCGTACAAACAAAGATTATATGGGCTGGTTTCATAGATCCGGCTATGCATTGATCTTGGACTTCTTCAATCATGGCTGTTCACGCCTGGTCCTGTTCACTCcatcttctgcttttcattccaaccCCACTCTCACTTACCTAATTggcaatttaatttacttaaccCGGCTGTTTCATAATTAGATTCCAAGTAGAAACCATTACAGAGGTCTGGTTCAGCATATTATTACATAAGAAAGGATATAAATTAGATGAGGCTATTTGGCCCTTCTAAGCTCTTTAGGTTGCAGGCTAATAACTAATTAATAGTAATTAATAATGATCCGATTATTCTTTCCCGACAATTCTTGAAGGATCCCAGGGtgaatgctttgaaaatatgGCCAGGGAACTtgttcaaattgtatttcaccTAATGTGTCAATAACTTCATAAATCAGAAGACAAAATGAAGATGCACAGTGAGGGATGAAAAcctctgcatttaaatgttattctgGGCCTGATCAGGATGCTGCAAACCAGTAGCAACAGTGAAGGCAAATACAAGTTTTATTGCTATGGCGTCCATGGCTAAAGCGTTCCAGCGGCAGATTGGAGAAAGTGAGGGCAACTGAAAGGTGGATGCTGCTTCTCCCACCCTCACAGTCACGTTTGAGTTGACAAGTTCGCTTTGCCCACTGCAGTCCTACGCAATCCGGTCTCCCCACAGACATACGCCAAGTCAGTCCTAACCCTAGGTTGCAAGAATGTATCAAATGATAAATCAACCTCAAAGCATACGACAGACATATCATCATGGACCTCTCAGAAACTAAGAGGAGGGAGCAGAAATCCACGTAGTAAATGTCAGCATCAACCCTAAAGAGTTCATTTCATaatcctaaaaacaaaaaacgcacTAACGGGGATCACCAAAGTTCTGAGATTGGTCTGAGTGGTGCGGGTGCTGTGTGGTGACTGGTCTTCAGTGTGCTGTTCGGTGTGGTGGTCAGTGGGGTGTCTGTGGTGCTCCAGGGTGCTGCTCCGGTACCTGAGGAGTCTCCATCTGCTTGTCGCCGGGATTGGCCTCCTGCTGCAGCTCTGCCAGCATGTCCTTCAGCTTCATCTCCAGCACGGGGTCCCTGCTCTCGGGCATGGCGCTGTGGGC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU192325 True 1723 lncRNA 0.44 2 3306686 3308431

Neighbor

gene id symbol gene type direction distance location
AMCG00005480 NA coding downstream 154767 3151044 ~ 3151919 (-)
AMCG00005479 NA coding downstream 300840 2992417 ~ 3005846 (-)
AMCG00005495 zgc:174895,LOC105911024,LOC107580547 coding downstream 442705 2857277 ~ 2863981 (-)
AMCG00005496 nek8,LOC107672375 coding downstream 485464 2811226 ~ 2821222 (-)
AMCG00005477 traf4,LOC106581191 coding downstream 528254 2766546 ~ 2778432 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding upstream 41526 3349957 ~ 3365350 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding upstream 258406 3566837 ~ 3568504 (-)
AMCG00005524 NA coding upstream 274970 3583401 ~ 3604355 (-)
AMCG00005552 LOC106567758,LOC106603288 coding upstream 344204 3652635 ~ 3692107 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding upstream 499334 3807765 ~ 3821342 (-)
G152665 NA non-coding downstream 104999 3201185 ~ 3201687 (-)
G152661 NA non-coding downstream 122001 3183821 ~ 3184685 (-)
G152652 NA non-coding downstream 146322 3160057 ~ 3160364 (-)
G152473 NA non-coding downstream 861589 2415072 ~ 2445097 (-)
G152452 mate4,LOC107718064,LOC107718062,LOC107699952,LOC106604060 non-coding downstream 988014 2294833 ~ 2318672 (-)
G152793 NA non-coding upstream 390380 3698811 ~ 3725372 (-)
G152798 NA non-coding upstream 406252 3714683 ~ 3718436 (-)
G152815 NA non-coding upstream 479777 3788208 ~ 3792444 (-)
G152853 NA non-coding upstream 681488 3989919 ~ 3993521 (-)
G152894 NA non-coding upstream 948790 4257221 ~ 4260312 (-)
G152645 NA other downstream 215972 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 416238 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 896439 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 977002 2197354 ~ 2329684 (-)
AMCG00005461 eif4h other downstream 1583186 1708683 ~ 1723500 (-)
AMCG00005525 LOC106567758 other upstream 298530 3606961 ~ 3632712 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 541705 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 976286 4284717 ~ 4292871 (-)
G153130 NA other upstream 1992338 5300769 ~ 5302198 (-)
G153342 NA other upstream 2772804 6081235 ~ 6082866 (-)

Expression


Co-expression Network