G152798


Basic Information

Item Value
gene id G152798
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 3714683 ~ 3718436 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192414
ccCAGCTCAAGGAGCACACTCCCCACATGCGGGTCCCACACTATGACTCGAGTGTCATAGGAGGCGGTGGCCAGTAAAGCCCCATCGGGCGAGAACTCGCAGGACACCACGTCGTTATGATGACCCTCCAGCTTTCGAATCAGGGTGTACTTATCCATATCCCACAGGAAGACCTTAAGGTAACATATTGTTACTCCACTGGTTTCCCCTTTCAGAGTTTTAGTTCACAGATTACAATAGGCTCGCTCCGCCGGCGGAAGCCTACGAAGAGAAACAGATACTGCAAGAGAAAAGAACATTTGATGGCCAACAGGTAGACACCTTTGGCAAACACACAATTGCAACATGCGACAAACTGCAGTTTCACTATTCAGAAACACGGTTGTGGGGGCCAATTTGCTCCAGTGCAACGCTTAATAAAAGGTACAgtaagacagaaaaacaaatttcaaattGTTTCAGATCTACAGGAATTTTGAACACCAAAACAAACTGAGGAAGGGAGCTGAATCAACTCCAAACCATACATACTTTTTCTGAATAGTTAACACGTCAGTCTTCAGAAAGCCTGAGACAGAAGCTGATCTTTTTGAGATCCAAGACAGCATTCCATGTCACCGAGTCATTTGAAACCACCTTCAAAGTGGTTCTACAGTTTCCTCATAGCTAAGGGTTAACTTGAGATTCAGAACATACAGCAAAGTACACATTTTACTAAACGGCTACCCAGTGAAGATGCAAGTCATACAATCAATTGCAACAGAGCAAACTTTGCTTTGTACGACAagttatcaatttattttttggcaaaaGAAGCTGTACCAGCAGCACACATTGCACTTGAGCAAAAGAGTTGCATCTCCCATATAAGAGCTCTAACATTAATATGATGCATTGCATACAGTAGGCTTTCAGCTTCACAGTTAACTTGGTCCTCCACCACGGCACTAAATACACTAAACAATGAAACGAAAGGGCTCAGATTCTCGGAAGACTGCCTGCATTTGAGCTCAGCTGCATCAACTCACCAAGACCGATCCCTCAGAGGAAGAGACTGGCCAGCAGTCTATTGCAGAAATTCAATCTTGAGCTCTGCTGACAAAGCAGGTGTAGTATGATCGGCTTTGACATTGCATGGTTTCCCATTGCATTGTTTCCCTATGTCAACTATGTcagcttaaaaatgtattcagccCCAAAGCTTGATtacagcaaacaaaatgctgagCTGCTTAATTCAGCTGATACATCtaacaattttatttagttttttttttttttttttttttttttttttacaaaacaccCACCTCGCTTCTTTTCTGAAGTAATTATTCACTATCAGCCAATAACATAGTCACGATTAGTCATTAGTCATagtcaagcaaacaaacaaagcttgTACTATAGGACTGTACTGTAGGAGGCAAGATCTGAATGCACCCAAACAGTGCAATTAGTTCTATTTAATAGTCGATTGTCTGTTGGCTTGACATGGCCGCCAAAGAGAGTTCGAGATGCTCAATCGgtcaattataaattatataaccAGAGGCCATTTCATACTGATGCATGGGGTTTTATTTGTCAGCTGAAACAGTAccctcatttaaataaataacaaataattaggACAAAGGCAGACATTACAGAAATACAAGCAGTCTGCCCACACACAAAGAACCCTTTCATTTCTGAATTATGCTTATCCTCTCATAACTAACTCAATTATAAATGTCCAAGGGAGAACATCGTCATAGCAGAAAAACAATCTGACTGCTGACCAACACTGCTCCCAACACACGAGCGGAGATACGACCAGGGTGCCTCGCTGGGTGTTAGACTTGCATTACACCATCTGAGGGTCTGAAGAGTATTCGGGACTGTCCTAAGCTATGTacgaaaacaaaatcaaatcaaaagggGTGAAATGATACATACATCACCCAGACTGAAGAATCTCAGAATTACATCCCCCACACTTAAGAGGGGGGGGGAATATActttacagattatatttttttacaataacaaaaacactcaaTCTATAATTTGGTTAATAAAGGCTGAAGCGCCTGCTCTCCAAACCAATTGTTTGGCTTTCTTCTCTCCCCCGTTTGCATTCGATACAGTGGTCGAAGGCTGTCGTGGGCCTTTTGACTGTGACGCAGAATCTGAACTAATTGTTAagtaaacaagcaaaaacaaactaggTGAGGGGCAGTTAGGAAGCGGGGAGGAGAGAATTTAATGAGGAAATAAaatttgtgataaaaaaaaacaaaacagcagaggaGGTGGATGTGGAGCAACACCTACGTACAGTAAATCTTGCTGTCGGGAGCAAGGCTACCTCCCGGCACGGGCACAGAGCGTCCCACGCGTGATGGCAGCCCTGCCACGCCCTCAGCACCGGCTACTCAATGTGAGCGCGGCGCTCCCTTCAAAACCTCAATCACACCACATAGTGCTGCCACCACCTGTGACAGGGAAAGCAAGACACTTATGGACAAACaacctaaattaaaaataaagattaaaatctCTGTCTCAGGAATATGAAGTCTACAGCCTTTATACTTTAGAATAAGCAAGTCACTGCCGGTTTAAAGGTTTATGTCACTTGCTCTCCTCGCAGCCTCACTTTTGTGAAAGGGGCTGAACCGAAGGACTGTGGCGTTTGGTCACATTAATGATCAGTCTTTTACGCCCACAGAAGGCTTTTTTCTAGGCTTTTCGTTGCATTCGCCTGGGTGCAAACCCCTCCTTtagaagaaatcaaataattagGGGTCACAGTATTGTAAGTCTCATGACTATCCTACAAATAAAAGTACACCACTTATCCTATTAAGGATTTCGAAAAAGAAATGCACTTAAATACACAttgcacaaatatttaaataaacagtatccccctctctctctcaattcgtGGGAGTATTTTTCTACTGTAAAATCTTTCAAGAAATGAAATAAACCTGCTTAAAATTACCAACCCGGCACACAGCCATGACAGATCATTTCTACTGTCTGCATGCGCGTTGGAATTACAAAAGCCAAtaggtcaaaataaataaaaacaaacttcaaGCAGGATAATAAACAGGTCATGACAccaagcagtttttttttttattattatttgggttTCATTGGTAGATTGTTCTGCAGAACtaagcacacaaagcacattcCACACCCTTGTCGGGTcagcagggagaggagagggaacTTCAATACGTACCGCTTTACCGGCGCCCACCGAGCACAGCACCGCGGAGTCGGGGGAGAACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192414 True 3297 lncRNA 0.42 2 3714683 3718436

Neighbor

gene id symbol gene type direction distance location
AMCG00005552 LOC106567758,LOC106603288 coding downstream 22576 3652635 ~ 3692107 (-)
AMCG00005524 NA coding downstream 110328 3583401 ~ 3604355 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding downstream 146179 3566837 ~ 3568504 (-)
AMCG00005501 LOC108435815,LOC107756385,LOC107666187 coding downstream 349333 3349957 ~ 3365350 (-)
AMCG00005480 NA coding downstream 562764 3151044 ~ 3151919 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding upstream 89329 3807765 ~ 3821342 (-)
AMCG00005568 NA coding upstream 285827 4004263 ~ 4019746 (-)
AMCG00005547 LOC107751257,LOC107695157,LOC107603166 coding upstream 815704 4534140 ~ 4536045 (-)
AMCG00005549 acaca coding upstream 824890 4543326 ~ 4544200 (-)
AMCG00005548 NA coding upstream 828641 4547077 ~ 4551659 (-)
G152736 NA non-coding downstream 406252 3306686 ~ 3308431 (-)
G152665 NA non-coding downstream 512996 3201185 ~ 3201687 (-)
G152661 NA non-coding downstream 529998 3183821 ~ 3184685 (-)
G152652 NA non-coding downstream 554319 3160057 ~ 3160364 (-)
G152473 NA non-coding downstream 1269586 2415072 ~ 2445097 (-)
G152815 NA non-coding upstream 69772 3788208 ~ 3792444 (-)
G152853 NA non-coding upstream 271483 3989919 ~ 3993521 (-)
G152894 NA non-coding upstream 538785 4257221 ~ 4260312 (-)
G152915 NA non-coding upstream 573594 4292030 ~ 4300398 (-)
G152942 NA non-coding upstream 813004 4531440 ~ 4531732 (-)
AMCG00005525 LOC106567758 other downstream 81971 3606961 ~ 3632712 (-)
G152645 NA other downstream 623969 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 824235 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 1304436 2406525 ~ 2410247 (-)
AMCG00005532 NA other downstream 1384999 2197354 ~ 2329684 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other upstream 131700 3850136 ~ 3869209 (-)
AMCG00005539 NA other upstream 566281 4284717 ~ 4292871 (-)
G153130 NA other upstream 1582333 5300769 ~ 5302198 (-)
G153342 NA other upstream 2362799 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 2513723 6232159 ~ 6234028 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location