G152866


Basic Information

Item Value
gene id G152866
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4258866 ~ 4260635 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192522
ATtgtaacacaaagttgtgttgtcctttgaacaaatacagaaagtgttcaatttaacacattcgTTTTAAGAGTgtagaaaaatgtttaatagttattttaatacatttttttagacCCACAGATTcaatgttgtgtatttaaagTTCCCTCCTGTTGACTCTACTATGCagtttcacatttcagaaaaagaaaaaacagatcagGCTAATGACTAACAActgaagatttggatgtttaagaaacaaatctagatacaaataaaataaacagtttaaattagcTTAGTTatccaaaataatgtattcagatGATGGTAAAAATGTCTTACAGACACATTTAGGTTTGGGGAGAATttagtttgtattaatttgtctACATTTTACAATTCTAATGATGTTAAGTGTAAAAATTTGTCATGTCTTGGTCCAGGCTGAGGTAAGGTTACAGTCCCTAGTAAATGTGTCTTTCGTTACGGttagtgttgtttttctactgACTTAACTGAATcgggtgtagatttgtatgggccGAGCTTTAAATCTTGGTGTTGGCGAGGGCTGGGGTTCAGGCTGAAAATGGAGAAGGTgagatgtttaagaaaaaaaacacaatttgaaaaaaGGGGTAAATTcaaaactattattaataagGTGTCAATTCTTTATCCCTGTATGAAATGATGATTCAATGTTAAGCAGGcaacaaatatattacaataaggCACACCTACTTCATTTTTGCAGCACACAAATCTTTGTGTAAATCTgtcaaaaaacaatttaatttaaatgaatgagatGCTAATTCTTATTTGTTTACTCATGCACGACCCCACAGGAACAATTCATTTAAACCAGTCGCATTTCTGCCGGTTCATATTTCCACTTGATTGAGCCCACACCTGATGCAGATAACACTAAGGCAATGACTTGGTTGTTAAAGAGTGTCAAGTCCCCACACCTTATTCAAACACCTGAATAAAACACCTCATATGGTTAAAAAGCTGATTGGTTTAATGGCTTGTTGTGGCAGTGTTAAAGACAATGTAACCTCCTACTGACAGGAGAGGGGAATAACCAAAACATGTGCACAGGTCTTTGTAATATTTCTACCATTACATCTTTGCCAGGCATCCACTTTGCAATACGTACTACAGTGTTTAAGAAAAGGAAGGAAGATGTAATggatattgattttaaatgtgaggAAAATGTGCTCAtactttcattgttttaatgccGGGGTATTATCACTGTACAGGCAAAATGGTGTCAGTTACCCTGGGTATcacaaataatgttatattcTGAAAAATTACCAAAAGTGggtgtatattttattactcCGTTACTCTTTCTGTGGATTTAAAAGGGAAATGCAGAATATGTTTTCAAGagatattgtaaaatattttctaaaggACAACCACATAAATGCtggaaaacagacaaagaaaattcagcttattattttttattttttgttgttgttacagaATAAGGATGCAATGCTTCTTTAATACAGCAGAGCTAAATCAATActgaaaatatcacattttgttACACTGTTCCAAAActatttctcttttgtttgtttctttcttttcttaccATCGTCACAAATACCGAAGGTGTGGTAAACCATACAGCaatgtgatgatgatgatgatgatgatgacgattcTGTACTCTATTTTTGAttcattgtacaatgtaatgaCTGAACCACATCATGGTCAAAGAATCTCTTAAATAAAAGTATGATTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192522 True 1770 lncRNA 0.33 1 4258866 4260635

Neighbor

gene id symbol gene type direction distance location
AMCG00005536 NA coding upstream 8018 4240208 ~ 4250848 (+)
AMCG00005535 LOC107690431,LOC107592631,LOC107743685 coding upstream 31176 4219881 ~ 4227690 (+)
AMCG00005567 LOC107718289,LOC105897181 coding upstream 265587 3918356 ~ 3993279 (+)
AMCG00005556 LOC107690467,LOC107718289,LOC107664918,LOC107743726,LOC108425789,LOC107585604 coding upstream 369205 3886333 ~ 3889661 (+)
AMCG00005557 NA coding upstream 380679 3877414 ~ 3878187 (+)
AMCG00005534 phf12 coding downstream 3780 4264415 ~ 4280445 (+)
AMCG00005537 NA coding downstream 44990 4305625 ~ 4310148 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding downstream 218811 4479446 ~ 4490819 (+)
AMCG00005545 LOC103910010 coding downstream 234973 4495608 ~ 4520105 (+)
AMCG00005553 NA coding downstream 344241 4604876 ~ 4615951 (+)
G152764 NA non-coding upstream 497039 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 998437 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 1058679 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 1071878 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 1168211 3071950 ~ 3090655 (+)
G152906 NA non-coding downstream 31395 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 271686 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 929892 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 935153 5195788 ~ 5201535 (+)
G153113 NA non-coding downstream 1047310 5307945 ~ 5309091 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 988022 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1409258 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1748190 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2312066 1929455 ~ 1946800 (+)
G152337 NA other upstream 2454963 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 21882 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 299578 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 954178 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2173886 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2227083 6487718 ~ 6488782 (+)

Expression


Co-expression Network