G152894


Basic Information

Item Value
gene id G152894
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4257221 ~ 4260312 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU192551
gttttccaGCATTTATGTGGTTGTcctttagaaaatattttacaatatctCTTGAAAACATATTCTGCATTTCCCTTTTAAATCCACAGAAAGAGTAACGgagtaataaaatatacaccCACTTTTGGTAATTTTTCAgaatataacattatttgtgATACCCAGGGTAACTGACACCATTTTGCCTGTACAGTGATAATACCCCggcattaaaacaatgaaagtaTGAGCACATTTTcctcacatttaaaatcaatatccATTACATCTTCCTTCCTTTTCTTAAACACTGTAGTACGTATTGCAAAGTGGATGCCTGGCAAAGATGTAATGGTAGAAATATTACAAAGACCTGTGCACATGTTTTGGTTATTCCCCTCTCCTGTCAGTAGGAGGTTACATTGTCTTTAACACTGCCACAACAAGCCATTAAACCAATCAGCTTTTTAACCATATGAGGTGTTTTATTCAGGTGTTTGAATAAGGTGTGGGGACTTGACACTCTTTAACAACCAAGTCATTGCCTTAGTGTTATCTGCATCAGGTGTGGGCTCAATCAAGTGGAAATATGAACCGGCAGAAATGCGACTGGTTTAAATGAATTGTTCCTGTGGGGTCGTGCATGAGTAAACAAATAAGAATTAGCatctcattcatttaaattaaattgttttttgacAGATTTACACAAAGATTTGTGTGCTGCAAAAATGAAGTAGGTGTGccttattgtaatatatttgttgCCTGCTTAACATTGAATCATCATTTCATACAGGGATAAAGAATTGACACcttattaataatagttttgAATTTACCCCttttttcaaattgtgttttttttcttaaacatctcACCTTCTCCATTTTCAGCCTGAACCCCAGCCCTCGCCAACACCAAGATTTAAAGCTCggcccatacaaatctacacccgATTCAGTTAAGTcagtagaaaaacaacactaaCCGTAACGAAAGACACATTTACTAGGGACTGTAACCTTACCTCAGCCTGGACCAAGACATGACAAATTTTTACACTTAACATCATTAGAATTGTAAAATGTagacaaattaatacaaactaaATTCTCCCCAAACCTAAATGTGTCTGTAAGACATTTTTACCATCatctgaatacattattttggatAACTAAgctaatttaaactgtttattttatttgtatctagatttgtttcttaaacatccaaatcttcagTTGTTAGTCATTAGCctgatctgttttttctttttctgaaatgtgaaactGCATAGTAGAGTCAACAGGAGGGAActttaaatacacaacattgAATCTGTGGgtctaaaaaaatgtattaaaataactattaaacatttttctacACTCTTAAAAcgaatgtgttaaattgaacactttctgtatttgttcaaaggacaacacaactttgtgttacaATGTACCAAATTGCAAcacaataatgtgcatttttaacACGATAAAGTATTTTTCCCTCACAGACTCgtgttaaaaagacacattattaTGTTGTACTTTGGTGAATTTGAACACAAATTTGGGTTGTCCTTGAAATTGAACACACtagttctaagagtgtaatttcgggtatcccatgaaagtttgtaaaaggaaaataataaactatgACATAAATAATTCCACCCAGAAAGACACAATTctgtacatgtatgtttataatgCATAGTGCGGTGCAAAGGGTTGGGTTGTGTCACACAATGTTATGTAGGTGTAACGTAGGCTTGTAAATGTTGGTAAACACACCTTTAATATATGCCTGTCTAAGCACTACACAATGTGTGGAGCTGTTCGGTATTACACAGGTTTCCAGCAGAgtggtttgttttggttgtcaGAGGATGACCTGGTTGTACCGCAACAGATTTAGTGCTACCTTCAGGTTCATGCGAGGTGAGGGCATGACGCTGGCTCTTTTGTGTGCGGGCTTCCTGCCGTTTCATTAGAGCTCCCCACCGTCTCCCGCGGGGGTTGAGCCAGTGGGTAGTCGGCTCTGTAGGTCAGAGGAACATTTCTCAACGAGTTTGCACTTCCTCACCCTTGACAGAACAGGTTAAACTATCAGAACCAGTAAATAGGAAAGCCGGGCAGCTGGAAAAGAAGATCAGCACACTGTCCTGTCAACTCCGGCACCCCTTGATATCCCCGTCACCGCCATTTCAATTCACATTtcccaaccttgtttggagaTGCAGGAAATAACCCTTGAGATAAAACGGCTCTGACAGGAGGGTgacaggaaaatgaaaagggTGTAAATCAGGAGAGATGTGCTTTGCTGTGAGAGCCTGGTTGGAAGCTCACATTTGAGACAGAAATGGATGGTACAAACATTTTTCGATTACTGTATATTCCATAAGATTGTGATGGATATTTATGTAAGGAGaatcttaaaaatataagtTTCCATTTAGATGAACATTTAAGGAGAAGGGTTGACATTGCCGCACACCGATTCATCGCAGATCTGTCCTAAATGCATTACAGAGAGAAGCACAGTTCTAACCGGGAAAGCTTGGGATgaaataaaagtttgtttgtCGTTGTTTTGGTCTAACTCTAAGGCATTTCTGTTCCGAACGCACACTGGGAAATCACAGCAGAATTCAACCTTACGGACTCAAAAAAGTTGTATTCCTTACTGACCTCAGCAAATGTCCTAATAGTCAGTGTAGTTTAATGCTGTGTAAGATATAAAACAGCTCAGTAAATCCTCTCCTTGCTCAGCTTTTAAAAGTCTGTggaatcaaatcaaaactaacCTTAACCCAAATCCTGACCCTAATCGCTAATCCTAACCATAACCCATCAAAATACTGAATCTGTCCCTGTAAAGCTACCATACACTTCTCTGAACTCCAGCGCCTGCATCGGTGTCATACTTCACTGtgcctgctctgttttgtgcttggtgttgtgttgcagtgtggTTAACGTGTTAAAGCTGTTAATTCATTCGCTGGTTTGAGTACTGGTGTGTTTTCTGGGAATGGGATGCTTTAAGATTGAGGGTATGTTGCATTTCAGTTGATAACGACAAGCTAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU192551 True 3092 lncRNA 0.38 1 4257221 4260312

Neighbor

gene id symbol gene type direction distance location
AMCG00005568 NA coding downstream 237475 4004263 ~ 4019746 (-)
AMCG00005561 cuedc1,LOC107682807,LOC107587359,LOC107746650,LOC107672109,LOC107757269 coding downstream 435879 3807765 ~ 3821342 (-)
AMCG00005552 LOC106567758,LOC106603288 coding downstream 565114 3652635 ~ 3692107 (-)
AMCG00005524 NA coding downstream 652866 3583401 ~ 3604355 (-)
AMCG00005497 msi2b,LOC105028669,LOC106603292 coding downstream 688717 3566837 ~ 3568504 (-)
AMCG00005547 LOC107751257,LOC107695157,LOC107603166 coding upstream 273828 4534140 ~ 4536045 (-)
AMCG00005549 acaca coding upstream 283014 4543326 ~ 4544200 (-)
AMCG00005548 NA coding upstream 286765 4547077 ~ 4551659 (-)
AMCG00005555 acaca coding upstream 300621 4560933 ~ 4596482 (-)
AMCG00005541 NA coding upstream 418338 4678650 ~ 4696115 (-)
G152853 NA non-coding downstream 263700 3989919 ~ 3993521 (-)
G152815 NA non-coding downstream 464777 3788208 ~ 3792444 (-)
G152793 NA non-coding downstream 531849 3698811 ~ 3725372 (-)
G152798 NA non-coding downstream 538785 3714683 ~ 3718436 (-)
G152736 NA non-coding downstream 948790 3306686 ~ 3308431 (-)
G152915 NA non-coding upstream 31718 4292030 ~ 4300398 (-)
G152942 NA non-coding upstream 271128 4531440 ~ 4531732 (-)
G153141 ruvbl2,LOC107664527,LOC107597476,LOC107677411,LOC107587476,LOC107722783 non-coding upstream 1091041 5351353 ~ 5352345 (-)
G153143 NA non-coding upstream 1093041 5353353 ~ 5355697 (-)
G153178 NA non-coding upstream 1226997 5487309 ~ 5489599 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 388012 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 624509 3606961 ~ 3632712 (-)
G152645 NA other downstream 1166507 3071860 ~ 3090714 (-)
AMCG00005491 supt6h,LOC107603297 other downstream 1366773 2872506 ~ 2890448 (-)
AMCG00005517 NA other downstream 1846974 2406525 ~ 2410247 (-)
AMCG00005539 NA other upstream 24405 4284717 ~ 4292871 (-)
G153130 NA other upstream 1040457 5300769 ~ 5302198 (-)
G153342 NA other upstream 1820923 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 1971847 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 2229943 6490255 ~ 6496571 (-)

Expression


Co-expression Network